Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,243,548 – 14,243,663 |
Length | 115 |
Max. P | 0.592787 |
Location | 14,243,548 – 14,243,663 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.87 |
Mean single sequence MFE | -19.50 |
Consensus MFE | -13.64 |
Energy contribution | -14.51 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.08 |
Mean z-score | -1.60 |
Structure conservation index | 0.70 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.592787 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14243548 115 - 22224390 ACCAUGUACUAAUAACUAAGAGUUUAUUAUUUUGUGCUGCUAAUAAUAAGUAAAUACUUUUCA-----AAGUAGCGCAAAAGUUUCAUUUUCUUUGACAAAAGUUACACAAAAACAAUAA ....((((((.......(((((.......((((((((((((......((((....))))....-----.))))))))))))........))))).......)).))))............ ( -21.90) >DroSec_CAF1 151772 119 - 1 CCCAUGUACUUAUAACUAAAAGCUUAUUAUUUUGUGCUGCUAAUAAUAAGUAAAUGCUUUUCAAAUGAAAGUAGCGCAGAAGUUUUAUU-UCUUUGACAAAAGUUACACAAAAACAAUAA ....(((((((.......((((..((...((((((((((((......((((....))))(((....)))))))))))))))....))..-.)))).....))).))))............ ( -19.90) >DroSim_CAF1 132459 119 - 1 CCGAUGUACUCAUAACUAAGAGCUUAUUAUUUUGUGCUGCUAAUAAUAAGUAAAUACUUUUCGAAUGAAAGUAGCGCAGAAGUUUUAUU-UCUUUGACAAAAGUUACACAAAAACAAUAA ..((((..(((........)))..)))).((((((((((((......((((....))))(((....)))))))))))))))(((((...-.((((....)))).......)))))..... ( -21.50) >DroYak_CAF1 143659 101 - 1 GCUA------------------CUUAUUAAUUUGUGCUGCUAAUAACAAGUCAACACUUUUCAGUUGAAUAUAGCUCAGAAGUUUUAUU-UCUUUGACAAAAGUUCCACAAAAACAAUAA ....------------------........((((((..(((......((((....)))).((((..(((((.((((....)))).))))-)..))))....)))..))))))........ ( -14.70) >consensus CCCAUGUACU_AUAACUAAGAGCUUAUUAUUUUGUGCUGCUAAUAAUAAGUAAAUACUUUUCAAAUGAAAGUAGCGCAGAAGUUUUAUU_UCUUUGACAAAAGUUACACAAAAACAAUAA .............................((((((((((((......((((....))))..........))))))))))))(((((.....((((....)))).......)))))..... (-13.64 = -14.51 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:57 2006