Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,227,926 – 14,228,018 |
Length | 92 |
Max. P | 0.664639 |
Location | 14,227,926 – 14,228,018 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 94.79 |
Mean single sequence MFE | -29.33 |
Consensus MFE | -22.84 |
Energy contribution | -22.84 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.82 |
Structure conservation index | 0.78 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.664639 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14227926 92 + 22224390 CGGCUCUGCUCUGCCUCCUGCAACACCUUUCUCCGCUUUCUCUGAUGACCGCAAUUUGUAGUCAUUGAGUGUGCCAAGGAGCAGGCGACCUG ..((.(((((((((.....)).............((...(((.((((((..(.....)..)))))))))...))...)))))))))...... ( -28.20) >DroSec_CAF1 136542 89 + 1 CGGCUCUGCUC---CUCCUGCAACACCUUUCUCCGCUUUCUCUGAUGACCGCAAUUUGUAGUCAUUGAGUGUGCCAAGGAGCAGGCGACCCG ..((.((((((---((...(((.................(((.((((((..(.....)..)))))))))..)))..))))))))))...... ( -28.81) >DroSim_CAF1 116610 89 + 1 CGGCUCUGCUC---CUCCUGCAACACCUUUCUCCGCUUUCUCUGAUGACCGCAAUUUGUAGUCAUUGAGUGUGCCAAGGAGCAGGCGACCCG ..((.((((((---((...(((.................(((.((((((..(.....)..)))))))))..)))..))))))))))...... ( -28.81) >DroEre_CAF1 124302 89 + 1 CGGCUCUGCUC---CACCUGCAACACCUUACACCGCUUCCUCUGAUGACCGCAAUUUGUAGUCAUUGAGUGUGCCAAGGAGCAGGCGACCUG ..((.((((((---(....(((.(((..............((.((((((..(.....)..))))))))))))))...)))))))))...... ( -26.93) >DroYak_CAF1 127105 89 + 1 CCGCUCUGCUC---CGCCUGCAACACCUUUCUCCGCGUCCUCUGAUGACCGCAAUUUGUAGUCAUUGAGUGUGCCAAGGAGCAGGCGACCUG .(((.((((((---((....).............(((..(((.((((((..(.....)..)))))))))..)))...))))))))))..... ( -33.90) >consensus CGGCUCUGCUC___CUCCUGCAACACCUUUCUCCGCUUUCUCUGAUGACCGCAAUUUGUAGUCAUUGAGUGUGCCAAGGAGCAGGCGACCUG ..............(.(((((....((((....(((...(((.((((((..(.....)..))))))))).)))..)))).))))).)..... (-22.84 = -22.84 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:49 2006