Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,222,926 – 14,223,024 |
Length | 98 |
Max. P | 0.832930 |
Location | 14,222,926 – 14,223,024 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 87.17 |
Mean single sequence MFE | -32.50 |
Consensus MFE | -24.58 |
Energy contribution | -25.10 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.11 |
Mean z-score | -1.97 |
Structure conservation index | 0.76 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.832930 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14222926 98 - 22224390 AUUCAAAAUAUCUGUGCAGAUCUGUUGUUGUUCCUGUU-------GGCUUUGUUGCUUGUUGGCUUGUUGCAGCCGAAAGAUAACAACAGCUCAUGGACGGAGUG------------- ..........(((((.((((.(((((((((((....((-------((((..((.((..(....)..)).))))))))..))))))))))).)).)).)))))...------------- ( -32.80) >DroSec_CAF1 131472 98 - 1 AUUCAAAAUAUCUUUGCAGAUCUGUUGUUGUUCCUGGU-------GGCUUUGUUGCUUGUUGGCUUGUUGCAGCCGAAAGAUAACAGCAGCUCAUGGGUGGAGUG------------- ...........(((..(.((.(((((((((((..((((-------.((......(((....))).....)).))))...))))))))))).))....)..)))..------------- ( -28.10) >DroSim_CAF1 110396 98 - 1 AUUCAAAAUAUCUCUGCAGAUCUGUUGUUGUUCCUGGU-------GGCUUUGUUGCUUGUUGGCUUGUUGCAGCCGAAAGAUAACAGCAGCUCAUGGGUGGAGUG------------- ...........(((..(.((.(((((((((((..((((-------.((......(((....))).....)).))))...))))))))))).))....)..)))..------------- ( -29.70) >DroEre_CAF1 119279 105 - 1 AUUCAAAAUAUCUCUGCAGAUCUGUUGUUCUUCCUCGUUGGUUGCGACAUUGUUGCUUGUUGGCUUGUUGCAGCCGAGAGAUAACAGCAGCUCAUGGGCGGAGUG------------- ...........((((((.((.((((((((....(((.((((((((((((.....(((....))).)))))))))))))))..)))))))).))....))))))..------------- ( -41.80) >DroYak_CAF1 121907 111 - 1 AUUCAAAAUAUCUCUGCAGAUCUGUUGUUGUUCCUGAU-------GGCUUUGUUGCUUGUUGGCUUGUUGCAGCCGAAAGAUAACAGCAGUUCAUGGGCGAAGUGAGGGGUGGAGUGU ...........(((..(...(((....((((((.(((.-------.((((((((((((.((((((......))))))))).)))))).)))))).))))))....))).)..)))... ( -30.10) >consensus AUUCAAAAUAUCUCUGCAGAUCUGUUGUUGUUCCUGGU_______GGCUUUGUUGCUUGUUGGCUUGUUGCAGCCGAAAGAUAACAGCAGCUCAUGGGCGGAGUG_____________ ...........((((((.((.(((((((((((.............(((......)))..((((((......))))))..))))))))))).))....))))))............... (-24.58 = -25.10 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:44 2006