Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,216,516 – 14,216,636 |
Length | 120 |
Max. P | 0.516793 |
Location | 14,216,516 – 14,216,636 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.39 |
Mean single sequence MFE | -33.10 |
Consensus MFE | -15.52 |
Energy contribution | -16.04 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.23 |
Mean z-score | -1.87 |
Structure conservation index | 0.47 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516793 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14216516 120 - 22224390 ACCUUUUUGGUUCUUUGAGGCCCAUAUUUGGCUGUCGAACAAUGUGCGGAUUAAUCAGUGUUAGCCACAGCCAAUUUGGCUUUUAAGAAUUGGAAUGCGUAUGCAUUGUAGGGAAUCUUG .((((.(..((((((.((((((.....((((((((..((((.((...........)).))))....))))))))...)))))).))))))..)(((((....)))))..))))....... ( -36.50) >DroSec_CAF1 125859 112 - 1 ACCUUUU--------UGAGGCCCAUAGUUGGCAGUCGAACAACGUGCGGAUUAAUCAGUGUUAGCCACAGCCAAUUUGGCUUUUAAGAAUUGCAAUGCGUACGCAUUGUAGGAAAUCUUG .((((((--------.((((((...(((((((.((((.....)).))((.(((((....)))))))...))))))).)))))).))))..((((((((....))))))))))........ ( -32.80) >DroSim_CAF1 103613 112 - 1 ACCUUUU--------UAAGGCCCAUAGUUGGCAGUCGAACAACGUGCGGAUUAAUCAGUGUUAGCCACAGCCAAUUUGGCUUUUAAGAAUUGCAAUGCGUACGCAUUGUAGGGAAUCUUG .((((((--------.((((((...(((((((.((((.....)).))((.(((((....)))))))...))))))).)))))).)))).(((((((((....)))))))))))....... ( -32.80) >DroEre_CAF1 114002 113 - 1 ACCUUUUUGGACCUGUGAGGCCCACAGUUGGCAGUCGUACAAUGUGCGGAUUAAUCACUGCUAGCCGCAGCCAAU-UAGUUCUUAA------CAAAGCGUAUGCAUUGUGGGGAAUCUUU ..((..((((..(((((.(.....).((((((((((((((...)))))((....)))))))))))))))))))).-.))((((..(------(((.((....)).))))..))))..... ( -32.20) >DroYak_CAF1 116157 98 - 1 ACCUUUGU----------CCCUCGUAAU-----GGCGAACAAUGCACGAAUGAAUCAGUAUUAGCCACAGCCAAU-UGGCUGUUAA------CAAUGCGUAUGCAUUGUAGGGAAUCUAG .......(----------(((((((...-----.))))((((((((.((.....)).(((((....((((((...-.))))))...------.)))))...)))))))).))))...... ( -31.20) >consensus ACCUUUUU_______UGAGGCCCAUAGUUGGCAGUCGAACAAUGUGCGGAUUAAUCAGUGUUAGCCACAGCCAAUUUGGCUUUUAAGAAUUGCAAUGCGUAUGCAUUGUAGGGAAUCUUG .(((..............((((((....)))..)))..((((((((((.(((......((..(((((.(.....).)))))..))........))).)))..))))))))))........ (-15.52 = -16.04 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:44 2006