Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,556,813 – 1,556,919 |
Length | 106 |
Max. P | 0.666928 |
Location | 1,556,813 – 1,556,919 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 83.47 |
Mean single sequence MFE | -27.66 |
Consensus MFE | -18.40 |
Energy contribution | -18.08 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.22 |
Mean z-score | -1.87 |
Structure conservation index | 0.67 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.666928 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1556813 106 + 22224390 CUG------CUGCUUGGCUUAUGCUUUGUACCCUUUUCGAGGGUAUUCCACUUAGUGGAACACUAAGUGAGC-CAAUAUCUUUGACAUUCAAGUUGAAUUCGCCUAUUUGUUC---- ...------..((((((((........((((((((...))))))))..(((((((((...))))))))))))-)))....((..((......))..))...))..........---- ( -30.00) >DroSec_CAF1 19218 104 + 1 CUG------CUGCUUGGCUUAUGCUUUGUACCCUUUUCGAGGGUAUUCCAAUU--UGGAACACUUGGUGAGC-CAAUUUCUGUGACAUUUAAGCAGAAUUUGCUUAUUUGAUC---- ...------....(((((((((.....((((((((...))))))))(((....--.))).......))))))-))).........((..(((((((...)))))))..))...---- ( -29.90) >DroSim_CAF1 21143 104 + 1 CUG------CUGCUUGGCUUAUGCUUUGUACCCUUUUCGAGGGUAUUCCAAUU--UGGAACACUUGGUGAGC-CAAUUUCUGUGACAUUUAAGCAGAAUUUGCUCAUUUGAUC---- ...------..(((((((((((.....((((((((...))))))))(((....--.))).......))))))-))).((((((.........))))))...))..........---- ( -28.50) >DroEre_CAF1 20864 115 + 1 CUGCUGCUGCUGCUUGGCUUAUGCUUUGUACCCUUUUCGAGGGUAUUCCAAUU--UGCAACACUAAACAAGCCCGAUAUCCGUGAUAUUUGAGUAGAAUUUGCCUAUUUUAUUAAGU ..((..((((((((((((....))...((((((((...)))))))).......--............)))))(.((((((...)))))).)))))).....)).............. ( -23.80) >DroYak_CAF1 19629 109 + 1 CUG------CUGCUUGGCUUAUGCUUUGUACCCUUUUCGAGGGUAUUUCAAUU--UGCAACACUAAAUACGCCCGAUAUCCGUGGCAUUUAAGUAGAAUUUGCCUAUUUGAUCAAGG ...------...((((((..((.....((((((((...))))))))....)).--.))............(((((.....)).)))..((((((((.......)))))))).)))). ( -26.10) >consensus CUG______CUGCUUGGCUUAUGCUUUGUACCCUUUUCGAGGGUAUUCCAAUU__UGGAACACUAAGUGAGC_CAAUAUCUGUGACAUUUAAGUAGAAUUUGCCUAUUUGAUC____ .........(((((((((((((.....((((((((...))))))))((((.....)))).......)))))).((.....)).......)))))))..................... (-18.40 = -18.08 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:24 2006