Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,191,422 – 14,191,524 |
Length | 102 |
Max. P | 0.562597 |
Location | 14,191,422 – 14,191,524 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 82.98 |
Mean single sequence MFE | -20.58 |
Consensus MFE | -15.14 |
Energy contribution | -14.98 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -1.57 |
Structure conservation index | 0.74 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.562597 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14191422 102 + 22224390 CGCUCAACGGAAACGGAAAUAAUUUGUCAUUUUAUUUCUAUUUUAUGAUUAUUUAUUUUAUUCUGGUUCUGGCCAUGCUU---------UCACAACGAUAUUU--GCUACCGA .((....((....))(((((((...(((((...((....))...)))))...)))))))....((((....)))).))..---------..............--........ ( -14.50) >DroSec_CAF1 101753 82 + 1 CGCUCAACGGAAACGGAAAUAAUUUGUCAUUUUAUUUCUAUUUUAUGAUUAUUUAUUUUAUUCUGGUUAUGGCCAUGCCA------G-------------------------A .......((....))(((((((...(((((...((....))...)))))...)))))))..((((((.........))))------)-------------------------) ( -16.80) >DroSim_CAF1 79278 105 + 1 CGCUCAACGGAAACGGAAAUAAUUUGUCAUUUUAUUUCUAUUUUAUGAUUAUUUAUUUUAUUCUGGUUCUGGCCAUGCCA------GAACCACAACGAUAUUU--GCUACCGA .((....((....))(((((((...(((((...((....))...)))))...)))))))....((((((((((...))))------))))))...........--))...... ( -27.60) >DroEre_CAF1 90829 104 + 1 CGCUCAACGGAAACGGAAAUAAUUUGUCAUUUUAUUUCUAUUUUAUGAUUAUUUAUUUUAUGCUGGCCCUGGCCAUGCUGCC-------CCACAAGGACAUUU--GCUACCGC .((....((....))(((((((...(((((...((....))...)))))...)))))))..((((((....)))).))((((-------......)).))...--))...... ( -20.80) >DroYak_CAF1 92785 113 + 1 CGCUCAACGGAAACGGAAAUAAUUUGUCAUUUUAUUUCUAUUUUAUGAUUAUUUAUUUUAUUCUGGUUCUGGCCAUGCUUCCACAAGUUCCACAAGGAUAUUUGUGCUACCGA .((....((....))(((((((...(((((...((....))...)))))...)))))))....((((....)))).))...((((((((((....))).)))))))....... ( -23.20) >consensus CGCUCAACGGAAACGGAAAUAAUUUGUCAUUUUAUUUCUAUUUUAUGAUUAUUUAUUUUAUUCUGGUUCUGGCCAUGCUA______G__CCACAACGAUAUUU__GCUACCGA .((....((....))(((((((...(((((...((....))...)))))...)))))))....((((....)))).))................................... (-15.14 = -14.98 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:16 2006