Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,170,206 – 14,170,297 |
Length | 91 |
Max. P | 0.772835 |
Location | 14,170,206 – 14,170,297 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 90.69 |
Mean single sequence MFE | -11.02 |
Consensus MFE | -8.82 |
Energy contribution | -8.70 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.11 |
Mean z-score | -1.63 |
Structure conservation index | 0.80 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.772835 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14170206 91 - 22224390 ACUCACAGACUCCUUUUCACCAUUCCCCA-AGCCGAAAUAGAUUCAUUAAUCAAAAAAAAAAAAAAAACCAAAGGAGCAAGCUGGAAUAAGC ..((.(((.(((((((......(((....-....)))...((((....))))..................)))))))....)))))...... ( -11.20) >DroSec_CAF1 80730 86 - 1 ACUCACAGACUCCUUUUCAUCAUUCCCCA-AGCCGAAAUAGAUUCAUUAAUCAAAAAA-----AAAACCCAAAGGAGCAAACUGGAAUAAGC ..((.(((.(((((((......(((....-....)))...((((....))))......-----.......)))))))....)))))...... ( -10.10) >DroSim_CAF1 58328 86 - 1 ACUCACAGACUCCUUUUCACCAUUCCCCA-AGCCGAAAUAGAUUCAUUAAUCAAAAAA-----AAAACCCAAAGGAGCAAACUGGAAUAAGC ..((.(((.(((((((......(((....-....)))...((((....))))......-----.......)))))))....)))))...... ( -10.10) >DroEre_CAF1 70749 83 - 1 ACUCACAGACUCCU-UUCACAAUUCCCCAUUGCCGAAAUAGAUUCAUUAAUCAAAA--------AAACCCAAAGGAGCAAACUGGAAUAAGC ..((.(((.(((((-((..((((.....))))........((((....))))....--------......)))))))....)))))...... ( -10.40) >DroYak_CAF1 71007 83 - 1 ACUCACAGACUCCUUUUCACCAUUUCCCA-AGCCGGAAUAGAUUCAUUAAUCAAAG--------AAACCCAAAGGAGAAAACUGGAAUAAGC ..((.(((.(((((((.......((((..-....))))..((((....))))....--------......)))))))....)))))...... ( -13.30) >consensus ACUCACAGACUCCUUUUCACCAUUCCCCA_AGCCGAAAUAGAUUCAUUAAUCAAAAAA_____AAAACCCAAAGGAGCAAACUGGAAUAAGC ..((.(((.(((((((......(((.........)))...((((....))))..................)))))))....)))))...... ( -8.82 = -8.70 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:56 2006