Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,165,489 – 14,165,607 |
Length | 118 |
Max. P | 0.658234 |
Location | 14,165,489 – 14,165,607 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.69 |
Mean single sequence MFE | -23.46 |
Consensus MFE | -16.33 |
Energy contribution | -16.73 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.23 |
Mean z-score | -1.71 |
Structure conservation index | 0.70 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.658234 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14165489 118 + 22224390 AGAUGUAUAGAUACAAGCACGGAUAAAGAUGCACGGCAAAAAAUUGUAGUUGUGUUGGAACAA--CUUAUACAGUAUAAUGAAAAUUAUUCAUUACUAACAAGACUUUGAUUAAUAUGUU .(((((((.(((.(((((.((..((....))..))))..........((((.((((((....(--((.....))).(((((((.....))))))))))))).)))))))))).))))))) ( -19.20) >DroSec_CAF1 76047 113 + 1 AGAUGUAUAGAUACAAGCACGGAUAAAGAUGCACAGCGAGAAAUUGGAGUUGUGUGGAGAAAA--UAUGUA-----UAGUGAAAAUUAUUCAUUAAUAACAUGACUUUGAUUAUUAUGUU ...((((....)))).((((.......).)))(((...((.(((..((((..(((........--.(((.(-----((((....))))).))).....)))..))))..))).)).))). ( -20.84) >DroSim_CAF1 53903 118 + 1 AGAUGUAUAGAUACAAGCACGGAUAAAGAUGCACAGAGAGAAAUUGGAGUUGUGUGGGGAAAA--UAUGUACAGUAUGGUGAAAAUUAUUCAUCAUUAACAUGACUUUGAUUAUUAUGUU ...((((....)))).((((.......).)))(((...((.(((..((((..(((........--..........((((((((.....))))))))..)))..))))..))).)).))). ( -21.85) >DroEre_CAF1 65736 115 + 1 AGAUGUAUAGAUACAAGCACGGAUACAGAUGCACUGCGAGAAAUUGCAGUUGUGUGA---AUA--CAUCUACAAUGUAAUGCAAAUUAUGCAUUAAUCACAUUAUCUUGAUUACAUUAUU ((((((((..(((((.((((.......).)))(((((((....))))))))))))..---)))--)))))..(((((((((((.....))))))(((((........))))))))))... ( -33.80) >DroYak_CAF1 66518 117 + 1 AGAUGUAUAGAUACAAGCACGGAUAAAGAUGCACAGAAAGAAAUUGGAGUUGUGUGA---AUAUCUAUCUACAAUGUAAUGGAAAUUAUCCAUACAUCACAUUACUUUGAUUAUAAUGUU ...((((....)))).((((.......).))).........(((..((((.((((((---..............((((.((((.....)))))))))))))).))))..)))........ ( -21.63) >consensus AGAUGUAUAGAUACAAGCACGGAUAAAGAUGCACAGCGAGAAAUUGGAGUUGUGUGG__AAAA__UAUCUACAAUAUAAUGAAAAUUAUUCAUUAAUAACAUGACUUUGAUUAUUAUGUU ...((((....)))).((((.......).))).........((((((((((((((((...................(((((((.....))))))).))))))))))))))))........ (-16.33 = -16.73 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:47 2006