Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,125,987 – 14,126,093 |
Length | 106 |
Max. P | 0.993060 |
Location | 14,125,987 – 14,126,093 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 69.73 |
Mean single sequence MFE | -28.93 |
Consensus MFE | -14.31 |
Energy contribution | -14.53 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.14 |
Mean z-score | -2.63 |
Structure conservation index | 0.49 |
SVM decision value | 2.37 |
SVM RNA-class probability | 0.993060 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14125987 106 - 22224390 UGCGGCCAUGCCAUUACCAUGGCCAACUUGACCUGAGCUUUUUUAGCCAGAUGGCUUCC----AUCGUACAGUUAGCUAACAGAAAA----GGUUUAAACAAUUAAACAAAACA ...(((((((.......)))))))..(((...(((.(((.....)))))).(((((..(----........)..)))))......))----)((((((....))))))...... ( -26.30) >DroSim_CAF1 33349 113 - 1 UGCGGCCAUGCCAUUACCAUGGCCAACUUGACCCUCGCUU-UUUAGCCAGAUGGCUGCCAGUAAUCGCACAAUUAGCUAACAAAAAAAAAUGGGUUAAACAAUUAAGCAAAACA ((((((((((.......)))))))...(((((((..(((.-..(((((....)))))..)))....((.......))..............)))))))........)))..... ( -32.10) >DroEre_CAF1 36957 91 - 1 UGCGGCCAUGCCAUGGCGAUGGCCAACUUAAGU-UGGCU-----------------UUCAGUUAUCGCGCACUUGGCUAACAGAA-G----CGGUUGGACAAUUAAACAAAGCA ...((((((((((((((((.(((((((....))-)))))-----------------.)).))))).).)))..))))).......-(----(..(((..........))).)). ( -28.40) >consensus UGCGGCCAUGCCAUUACCAUGGCCAACUUGACC_UAGCUU_UUUAGCCAGAUGGCUUCCAGU_AUCGCACAAUUAGCUAACAGAAAA____GGGUUAAACAAUUAAACAAAACA ((((((((((.......)))))))....................((((....))))..........)))............................................. (-14.31 = -14.53 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:25 2006