Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,080,845 – 14,080,944 |
Length | 99 |
Max. P | 0.597272 |
Location | 14,080,845 – 14,080,944 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 83.04 |
Mean single sequence MFE | -21.72 |
Consensus MFE | -18.03 |
Energy contribution | -19.69 |
Covariance contribution | 1.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.46 |
Structure conservation index | 0.83 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.597272 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14080845 99 + 22224390 CUGAUUUUUUUUUUUUGCU---------------UUACAUGUACAUCAGCGGUGCAUUUCCAUUGUUUGUCCGAAUUAAUGGUGGCGUUAUUUUUAACGAUCAGCACUAUAACU (((((..............---------------..........))))).(((((....(((((((((....))).))))))((((((((....))))).))))))))...... ( -17.96) >DroSec_CAF1 2977 109 + 1 -----UUUAUCGUUUUGCUUUGUACAAAUCACCUUCAGAAGUACAUCAGCGGUGCAUUUCCAUUGUUUGUCCGAAUUAAUGGUGGCGUUAUUUUUAACGAUCAGCACUAUCCCU -----...........(((.(((((...((.......)).)))))..)))(((((....(((((((((....))).))))))((((((((....))))).))))))))...... ( -23.60) >DroSim_CAF1 2847 114 + 1 UUUAUUUUUUCUUUUUGCUUUGUACAAAUCACCUUCAGAAGUACAUCAGCGGUGCAUUUCCAUUGUUUGUCCGAAUUAAUGGUGGCGUUAUUUUUAACGAUCAGCACUAUCCCU ................(((.(((((...((.......)).)))))..)))(((((....(((((((((....))).))))))((((((((....))))).))))))))...... ( -23.60) >consensus _U_AUUUUUUCUUUUUGCUUUGUACAAAUCACCUUCAGAAGUACAUCAGCGGUGCAUUUCCAUUGUUUGUCCGAAUUAAUGGUGGCGUUAUUUUUAACGAUCAGCACUAUCCCU ................(((.(((((...............)))))..)))(((((....(((((((((....))).))))))((((((((....))))).))))))))...... (-18.03 = -19.69 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:12 2006