Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,060,179 – 14,060,269 |
Length | 90 |
Max. P | 0.851984 |
Location | 14,060,179 – 14,060,269 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 76.74 |
Mean single sequence MFE | -29.50 |
Consensus MFE | -17.76 |
Energy contribution | -17.72 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.07 |
Mean z-score | -1.89 |
Structure conservation index | 0.60 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.851984 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14060179 90 + 22224390 ACAA-----------------------------GCUCACAGUCUGGCAACCUUUCACCUCGUCGACGAUCCGGCAACGCUAGAAAAACGCGAGCCGCCUGAAAAGCAAGGCAAAUUACA ....-----------------------------((((.(..((((((...........(((....)))...(....))))))).....).)))).((((........))))........ ( -23.60) >DroSec_CAF1 1535 90 + 1 AUAA-----------------------------GCGCACAGUCUGGCAACCUUUCACAUCGUCGACGAUCCGGCAACGCUAGAAAAACGCGAGCCGCCUGAAAAGCAAGGCAAAUUACA ....-----------------------------(((.....((((((..........((((....))))..(....)))))))....)))..(((..((....))...)))........ ( -23.80) >DroSim_CAF1 1538 90 + 1 AUAA-----------------------------GCUCACCGUCUGGCAACCUUUCACAUCGUCGACGAUCCGGCAACGCUAGAAAAACGCGAGCCGCCUGAAAAGCAAGGCAAAUUACA ....-----------------------------((((.(..((((((..........((((....))))..(....))))))).....).)))).((((........))))........ ( -24.40) >DroEre_CAF1 1421 111 + 1 AGUGG--------GAACAUAUCGCUGGCAGCCAGCUGACAGUCCGGCAACGUUUUGCAUCGUCGACCGUCUGGCAACGCUAGAAAAACGCGAGCCGCCUGAAAAGCAAGGCAAAUUACA .(((.--------...)))...(((((...)))))((.(((..((....))..)))))(((.((....((((((...))))))....)))))(((..((....))...)))........ ( -33.10) >DroYak_CAF1 1434 119 + 1 AAAAGCUUAGUGUAGACCUAUCGUUGGCAGCCAGCUGCCAGUCCGGCAACGCUUCGCAUCGGCGAGGGUCUGGCAACGCUAGAAAAACGCGAGCCGCCUGAAAAGCAAGGCAAAUUACA ....((((.((((....(((.(((((.((((((((((((.....))))..)))((((....)))).)).))).))))).)))....)))))))).((((........))))........ ( -42.60) >consensus AUAA_____________________________GCUCACAGUCUGGCAACCUUUCACAUCGUCGACGAUCCGGCAACGCUAGAAAAACGCGAGCCGCCUGAAAAGCAAGGCAAAUUACA ............................................(((.............((((......))))..(((.........))).)))((((........))))........ (-17.76 = -17.72 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:08 2006