Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 243,616 – 243,715 |
Length | 99 |
Max. P | 0.684307 |
Location | 243,616 – 243,715 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.74 |
Mean single sequence MFE | -23.53 |
Consensus MFE | -19.16 |
Energy contribution | -18.83 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.14 |
Mean z-score | -1.27 |
Structure conservation index | 0.81 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.684307 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 243616 99 + 22224390 ---------------------CAUUAACAUCUUUCGCAAUGCGUUUAAAAUCUAUUAUGCUGGCGUGGACUUCCACUGGCAAAACGCACUGCGCUUCUGCAUCAAUUUUUCGGCAAUCAC ---------------------..............(((.(((((((...........((((...((((....)))).))))))))))).)))((....)).................... ( -21.80) >DroSim_CAF1 12321 120 + 1 GAAUAAUGAGUGGCUCCACUUCAUUAACAUCUUCCGCAAUGCGUUUAAAAUCUAUCAUGCUGGCGUGGACUUCCACUGGCGAAACGCACUGCACUCAUGCAUCAAUUUUUCGGCAAUCAC ...(((((((((....))).)))))).........(((.(((((((...........((((...((((....)))).))))))))))).))).....(((............)))..... ( -28.40) >DroYak_CAF1 13327 108 + 1 ------------GCUGCCCUUCAAUAAGCCCUUCUGCAAUGCAUUUAAAAUCUAUCAUGCCGACGUGGACUUCCACUGGCAAAACGCACUGUACUCCUGCAUCAAUUUUUCGGCAAUCAC ------------..((((.........((......)).(((((..............(((((..((((....)))))))))..((.....)).....))))).........))))..... ( -20.40) >consensus ____________GCU_C_CUUCAUUAACAUCUUCCGCAAUGCGUUUAAAAUCUAUCAUGCUGGCGUGGACUUCCACUGGCAAAACGCACUGCACUCCUGCAUCAAUUUUUCGGCAAUCAC ...................................(((.(((((((...........(((((..((((....)))))))))))))))).))).....(((............)))..... (-19.16 = -18.83 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:26 2006