Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,046,024 – 14,046,130 |
Length | 106 |
Max. P | 0.998125 |
Location | 14,046,024 – 14,046,130 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 70.41 |
Mean single sequence MFE | -25.52 |
Consensus MFE | -12.92 |
Energy contribution | -13.60 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.13 |
Mean z-score | -2.56 |
Structure conservation index | 0.51 |
SVM decision value | 3.01 |
SVM RNA-class probability | 0.998125 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14046024 106 - 22224390 GUUGGAAUUCAAUAACUAUCUUAGUAGUUGCGGUUUGCAUUUUCCUAAACUGCAAUUUAUAGUUUGCUUCAAAAAGCAGAA--------------AUUAGUAUUUCCUAUCCGAUUAGUU ((((((.......((((((......((((((((((((........)))))))))))).))))))(((((....)))))(((--------------((....)))))...))))))..... ( -23.60) >DroSec_CAF1 14794 120 - 1 GUUGGAAUUCAAUAACUAUCCUAGUAGUUGCGGUUUGCAUUUUCCUAAACUGCAAUUUAUAGUUUGGUUCAAAAAGCACGAUUAUAUCUUUAGGAAUUAGUAAUUCCUAUCCGAUUAGUG ((((((.......(((((..(((..((((((((((((........))))))))))))..)))..))))).....................(((((((.....)))))))))))))..... ( -30.10) >DroSim_CAF1 15153 103 - 1 GUUGGAAUUCAAUAACUAUCUUAGUAGUUGCGGUUUGCAUUUUCCUAAACUGCAAUUUAUAGUUUGGUUCAAAAAUCACGAUUAAAUCUUU-----------------AUCCGAUUAGUG ((((((.......(((((..(((..((((((((((((........))))))))))))..)))..)))))..........(((...)))...-----------------.))))))..... ( -19.70) >DroEre_CAF1 14993 107 - 1 GUCCGAAUUCAAUAACUAUCUUUGUAGUUGCGGACAGA-CUUUUCUGAACUGCAAUUUAUAGUUGAGUUUGGAAAACGUGAUUAUAACA------AUAGUAAAUUACU-----AUUAAU- .((((((((((...(((((..((((((((.((((....-....))))))))))))...)))))))))))))))...............(------((((((...))))-----)))...- ( -29.80) >DroYak_CAF1 14794 98 - 1 GUCCGAAUUCAAUAACUAUCUUAGUAGUUGCGGUUUGAAUUUUUCUAAACUGCAAUUAACAGCUUAAUUCGGAGAACAUGAUUA----A------AUUGUUAUUUUC-----------U- .((((((((.....((((...))))((((((((((((........))))))))))))........))))))))(((.(((((..----.------...))))).)))-----------.- ( -24.40) >consensus GUUGGAAUUCAAUAACUAUCUUAGUAGUUGCGGUUUGCAUUUUCCUAAACUGCAAUUUAUAGUUUGGUUCAAAAAACACGAUUA_A_CA______AUUAGUAAUUCCUAUCCGAUUAGU_ ....(((((....((((((......((((((((((((........)))))))))))).)))))).))))).................................................. (-12.92 = -13.60 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:02 2006