Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,011,477 – 14,011,568 |
Length | 91 |
Max. P | 0.849108 |
Location | 14,011,477 – 14,011,568 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 73.92 |
Mean single sequence MFE | -37.27 |
Consensus MFE | -19.31 |
Energy contribution | -21.95 |
Covariance contribution | 2.64 |
Combinations/Pair | 1.20 |
Mean z-score | -1.86 |
Structure conservation index | 0.52 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.849108 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14011477 91 + 22224390 UCACAAGGAGGUGCCUUCGGGCCACAGGGAAUACCGGGCAAUGGU------UUCCUAGG------AGGUAACUUCCCGCCACAGGGAGGGCCCUUCCCAGGAU ......((((....))))..(((...((.....)).)))......------.((((.((------(((...((((((......))))))...))))).)))). ( -35.10) >DroPse_CAF1 142757 88 + 1 GAGCAGGGAGGUCCAUUCCCAGGACUGGGA------GGU---CCA------UUCCCAGGGCAGGCAGGUCCUUUCCCAGGGCAGGGAGGUCCAUUCCCAGGAC .....((((((.((..((((.(..((((((------(..---...------)))))))..)......(((((.....))))).)))))).))..))))..... ( -35.40) >DroSec_CAF1 38166 90 + 1 CCACAGGGAGGUGCCUUCGGGCCACAGGGAAUACCGGGCAAUGGU------UUCCCAG-------AGGUAACUUCCCGCCACAGGGAGGGCCCUUCCCAGNNN .....((((((.(((....)))....(((((.((((.....))))------)))))..-------.(((..((((((......)))))))))))))))..... ( -39.30) >DroSim_CAF1 40163 91 + 1 CCACAGGGAGGUGCCUUCGGGCCACAGGGAAUACCGGGCAAUGGU------UUCCCAGG------AGGUAACUUCCCGCCACAGGGAGGCCCCUUCCCAGGAU ((...((((((.((((((.(((....(((((.((((.....))))------))))).((------(((...))))).)))....)))))).))))))..)).. ( -40.50) >DroEre_CAF1 36105 88 + 1 CCACAGGGAGGUGCCUUCGGGCCACAGGGAAUAGCUGGU---------AACUUCCCAGG------AGGAAACUUCCCCCCACAGGGAGGACCCUUCCAAGGAU ((...((((((((((....)))..(((.......)))..---------.))))))).((------(((...((((((......))))))...)))))..)).. ( -37.20) >DroYak_CAF1 38920 97 + 1 CCGCAGGCAGGUGCCUUUGGUCCACAGGGCAUACCUGGCAAUGGUGUCAACUAUCCAGG------AGCUAACUUCCCACAACAGGGAGGACCCUUCCCAGGAG (((.((((....)))).)))(((..((((....(((((..(((((....))))))))))------......((((((......)))))).)))).....))). ( -36.10) >consensus CCACAGGGAGGUGCCUUCGGGCCACAGGGAAUACCGGGCAAUGGU______UUCCCAGG______AGGUAACUUCCCGCCACAGGGAGGACCCUUCCCAGGAU .....((((((.(((....)))....(((((....................)))))...............((((((......))))))..))))))...... (-19.31 = -21.95 + 2.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:48 2006