Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,002,601 – 14,002,692 |
Length | 91 |
Max. P | 0.988845 |
Location | 14,002,601 – 14,002,692 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 91.76 |
Mean single sequence MFE | -20.66 |
Consensus MFE | -17.28 |
Energy contribution | -18.32 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.12 |
Mean z-score | -2.17 |
Structure conservation index | 0.84 |
SVM decision value | 2.14 |
SVM RNA-class probability | 0.988845 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14002601 91 - 22224390 ACACGGUUCAGCUGAUUUUAUGGAUCUCAUUCCGCAAAAUUAGCUUAUCUUAUUAACUUACUGACUUUCAUAAUAACGGUUGAAAGUGUGC .((((((..((((((((((.((((......)))).)))))))))).)))..............(((((((..........)))))))))). ( -24.10) >DroSec_CAF1 30032 91 - 1 ACACGGUUCAGCUGAUUUUAUGGAUCUCAUUCCGCAAAAUUAGCUUAUCUUAUUAACUUACUGACGUUCAUAAUAAUGGUUGAAAGCGUGC .((((.(((((((((((((.((((......)))).)))))))))..(((((((((....((....))...)))))).)))))))..)))). ( -22.50) >DroSim_CAF1 30313 91 - 1 ACACGGUUCAGCUGAUUUUAUGGAUCUCAUUCCGCAAAAUUAGCUUAUCUUAUUAACUUACUGACUUUCAUAAUAAAGGUUGAAAGCGUGC .((((....((((((((((.((((......)))).))))))))))...................((((((..........)))))))))). ( -23.10) >DroEre_CAF1 29410 83 - 1 -------UUAGCUGAUUUUAUGGAUCUCAUUCCGCAA-AUUAGCUUAUAUUAAUAACUUACUGACUUUCAUAACAAAGGUUGAAAGCGUGC -------..(((((((((..((((......)))).))-))))))).............(((.(.((((((..........)))))))))). ( -16.00) >DroYak_CAF1 31238 91 - 1 AUAUGGUUUAGCUGAUUUUAUGGCUCUCAUUCCGCAAAAUUAGCUUAUCUUAUUAACUUACUGACUUUCAUAAUAAAGGUUGAAAGCGUGC ....(((..((((((((((.(((........))).)))))))))).))).........(((.(.((((((..........)))))))))). ( -17.60) >consensus ACACGGUUCAGCUGAUUUUAUGGAUCUCAUUCCGCAAAAUUAGCUUAUCUUAUUAACUUACUGACUUUCAUAAUAAAGGUUGAAAGCGUGC .((((....((((((((((.((((......)))).))))))))))...................((((((..........)))))))))). (-17.28 = -18.32 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:40 2006