Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,998,573 – 13,998,683 |
Length | 110 |
Max. P | 0.518076 |
Location | 13,998,573 – 13,998,683 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 78.34 |
Mean single sequence MFE | -20.72 |
Consensus MFE | -10.12 |
Energy contribution | -9.38 |
Covariance contribution | -0.75 |
Combinations/Pair | 1.22 |
Mean z-score | -2.25 |
Structure conservation index | 0.49 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.518076 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13998573 110 + 22224390 UCGAGGUUACUACAUCCAUGGGAUUCCCCCCCAA---AAAAAACGAGUGACCAACGAAGAGCAA-AUCGCCUUCAUAAAUCAUUAUAUAUGUAUAUAAUGUCUAUAUGUCUGAC ....(((((((.......((((.......)))).---........)))))))...((((.((..-...))))))......((((((((....)))))))).............. ( -24.69) >DroSim_CAF1 26319 93 + 1 UCGAGGUUACUCCAUCCAUGGGAUUCCCCCC------AAAAAACGAGUGACCAUCGAAGACCAA-ACCGCCUUCAUAAAUCAUUAUG--------------AUAUACGCCUGAC ((((((((((((......((((......)))------)......)))))))).)))).......-...((..((((((....)))))--------------).....))..... ( -25.00) >DroEre_CAF1 25429 96 + 1 UCGAGGUUA---CAUCUAUGGGAUUCCCCACAAAACAAAAAAACGAGUGACCAACGAAGACCAA-ACCGCCUUCAUAAAUCAUUAUG----------AUA----UAUACCUGAC (((.(((((---(.....((((....)))).....(........).))))))..))).......-.......((((((....)))))----------)..----.......... ( -15.10) >DroYak_CAF1 27503 95 + 1 UCGAGGUUA---CAUCUAUGGGAUUCCCCCCAA------AAAACGAGUGACCAACGAAGACCAAAACCGCCUUCAUAAAUUAUUAUG----------ACAUUUGUAUGCCCGAC (((.(((..---......((((......)))).------...(((((((.....((...........))...((((((....)))))----------))))))))..)))))). ( -18.10) >consensus UCGAGGUUA___CAUCCAUGGGAUUCCCCCCAA____AAAAAACGAGUGACCAACGAAGACCAA_ACCGCCUUCAUAAAUCAUUAUG__________AUA__UAUAUGCCUGAC (((.(((............(((....)))................(((((.....((((...........)))).....))))).......................)))))). (-10.12 = -9.38 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:38 2006