Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,968,851 – 13,968,957 |
Length | 106 |
Max. P | 0.706269 |
Location | 13,968,851 – 13,968,957 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 80.48 |
Mean single sequence MFE | -34.12 |
Consensus MFE | -25.07 |
Energy contribution | -24.79 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.15 |
Mean z-score | -1.41 |
Structure conservation index | 0.73 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.706269 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13968851 106 - 22224390 GCCCUCGAUCUUUCUCUGGGUUCUGGGGCGACACUUGCAUCAUCAUCAUUUUGGUGACUUUUGCUCUAUGAGUUG-UGGCAGAGGGUCACUGGAAUAGCGCAGGAGU (((((.((.(((.....))).)).)))))..........((((((......))))))(((((((.((((.....(-((((.....)))))....)))).))))))). ( -35.30) >DroPse_CAF1 99623 94 - 1 GCCCUCGAUCUGUUCUGCGGUUCUGGGGCGACACUUGUG----CAUCAUUUUGGUGACUUUUGCUCUUC-CCA---UCCCGCAGGGUCAAUGGAAUUG-----GGGG .(((((((((((..((((((...(((((.((((...((.----((((.....))))))...)).)).))-)))---..))))))..)....)).))))-----)))) ( -35.70) >DroSec_CAF1 2069 104 - 1 GCCCUCGAUCUUUCUCUGGGUUCUGGGGCGACACUUGCAUCAUCAUCAUUUUGGUGACUUUUGCUCUAUGAGA---UGGCAGAGGGUCACUGGAAUUUCGCAGGAGG (((((.((.(((.....))).)).)))))....(((((.........((((..(((((((((((.(.......---.)))))).))))))..))))...)))))... ( -33.20) >DroSim_CAF1 2148 104 - 1 GCCCUCGAUCUUUCUCUGGGUUCUGGGGCGACACUUGCAUCAUCAUCAUUUUGGUGACUUUUGCUCUAUGAGA---UGGCAGAGGGUCACUGGAAUUUCGCAGGAGG (((((.((.(((.....))).)).)))))....(((((.........((((..(((((((((((.(.......---.)))))).))))))..))))...)))))... ( -33.20) >DroYak_CAF1 2490 107 - 1 GCCCUCGAUCUUUCUCUGGGUUCUGGGGCGACACUUGCAUCAUCAUCAUUUUGGUGACUUUUGCACUAUGAAACGCUGGCAGAGGGUCACUAAAAUUGGUCAGUAAC (((((.((.(((.....))).)).))))).....((((...((((..(((((((((((((((((.(...........)))))).))))))))))))))))..)))). ( -31.60) >DroPer_CAF1 101661 94 - 1 GCCCUCGAUCUGUUCUGCGGUUCUGGGGCGACACUUGUG----CAUCAUUUUGGUGACUUUUGCUCUUC-CCA---UCCCGCAGGGUCAAUGGAAUUG-----GGGG .(((((((((((..((((((...(((((.((((...((.----((((.....))))))...)).)).))-)))---..))))))..)....)).))))-----)))) ( -35.70) >consensus GCCCUCGAUCUUUCUCUGGGUUCUGGGGCGACACUUGCAUCAUCAUCAUUUUGGUGACUUUUGCUCUAUGAGA___UGGCAGAGGGUCACUGGAAUUGCGCAGGAGG (((((.((.(((.....))).)).)))))..................(((((((((((((((((..............))).))))))))))))))........... (-25.07 = -24.79 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:20 2006