Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,962,195 – 13,962,314 |
Length | 119 |
Max. P | 0.961113 |
Location | 13,962,195 – 13,962,314 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.73 |
Mean single sequence MFE | -45.30 |
Consensus MFE | -34.79 |
Energy contribution | -36.35 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.06 |
Mean z-score | -2.84 |
Structure conservation index | 0.77 |
SVM decision value | 1.52 |
SVM RNA-class probability | 0.961113 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13962195 119 + 22224390 AAAAAGCGCAGGCGGGUGGGCGCCGUUGGCCCCAACGCGAGAGUCAAGAACGUAAAGCAUAAUAAAAAGUCGUGCCUUACGUGCAGCAGUUGGAAAGCCCCCCCCCGAAUGCGCCC-ACC .....(((((..((((.(((((((...))).(((((((....))...(.((((((.(((..((.....))..))).)))))).)....)))))...))))...))))..)))))..-... ( -47.30) >DroSec_CAF1 13722 117 + 1 AAAAAGCGCAGGCGGGUGGGCGCCGUUGGCCCCAACGCGAGAGCCAAGAACGUAAAGCAUAAUAAAAAGUCGUGCCUUACGUGCAGCAGUUGGGAAGCCC---CCCGAAUGUACCCCCCC .......(((..((((.(((((((...)))((((((((....))...(.((((((.(((..((.....))..))).)))))).)....))))))..))))---))))..)))........ ( -47.70) >DroSim_CAF1 14178 116 + 1 AAAAAGCGCAGGCGGGUGGGCGCCGUUGGCCCCAACGCGAGAGCCAAGAACGUAAAGCAUAAUAAAAAGUCGUGCCUUACGUGCAGCAGUUGGGAAGCCC---CCCGAAUGUACCC-CCC .......(((..((((.(((((((...)))((((((((....))...(.((((((.(((..((.....))..))).)))))).)....))))))..))))---))))..)))....-... ( -47.70) >DroYak_CAF1 14093 114 + 1 AAUAAGCGCAGGCGGGUGGGCGCCGUUAGCCCCUUCGCGAGAGCCAAGAACGUAAAGCAUAAUAAAAAGUCUUGCCUUACGUGAAGCUUUUUGGAAUCCC---CCC---UCCACCGCCNN .....(((..((.(((.(((..(((..(((..(((.((....)).))).((((((.(((..((.....))..))).))))))...)))...)))...)))---)))---.))..)))... ( -38.50) >consensus AAAAAGCGCAGGCGGGUGGGCGCCGUUGGCCCCAACGCGAGAGCCAAGAACGUAAAGCAUAAUAAAAAGUCGUGCCUUACGUGCAGCAGUUGGGAAGCCC___CCCGAAUGCACCC_CCC .......(((..((((.((((((.....))((((((((....)).....((((((.(((..((.....))..))).))))))......))))))..))))...))))..)))........ (-34.79 = -36.35 + 1.56)
Location | 13,962,195 – 13,962,314 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.73 |
Mean single sequence MFE | -46.63 |
Consensus MFE | -37.17 |
Energy contribution | -38.30 |
Covariance contribution | 1.13 |
Combinations/Pair | 1.06 |
Mean z-score | -1.96 |
Structure conservation index | 0.80 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.856732 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13962195 119 - 22224390 GGU-GGGCGCAUUCGGGGGGGGGCUUUCCAACUGCUGCACGUAAGGCACGACUUUUUAUUAUGCUUUACGUUCUUGACUCUCGCGUUGGGGCCAACGGCGCCCACCCGCCUGCGCUUUUU (((-((((((...(((((((.(((.........))).)((((((((((..(.......)..))))))))))......))))))(((((....)))))))))))))).((....))..... ( -50.60) >DroSec_CAF1 13722 117 - 1 GGGGGGGUACAUUCGGG---GGGCUUCCCAACUGCUGCACGUAAGGCACGACUUUUUAUUAUGCUUUACGUUCUUGGCUCUCGCGUUGGGGCCAACGGCGCCCACCCGCCUGCGCUUUUU .((((((..((..((((---((((..((((((.((.((((((((((((..(.......)..)))))))))).....))....))))))))(((...))))))).))))..))..)))))) ( -47.70) >DroSim_CAF1 14178 116 - 1 GGG-GGGUACAUUCGGG---GGGCUUCCCAACUGCUGCACGUAAGGCACGACUUUUUAUUAUGCUUUACGUUCUUGGCUCUCGCGUUGGGGCCAACGGCGCCCACCCGCCUGCGCUUUUU .((-(((..((..((((---((((..((((((.((.((((((((((((..(.......)..)))))))))).....))....))))))))(((...))))))).))))..))..))))). ( -47.30) >DroYak_CAF1 14093 114 - 1 NNGGCGGUGGA---GGG---GGGAUUCCAAAAAGCUUCACGUAAGGCAAGACUUUUUAUUAUGCUUUACGUUCUUGGCUCUCGCGAAGGGGCUAACGGCGCCCACCCGCCUGCGCUUAUU .....((((.(---((.---(((...........((((((((((((((.((.......)).)))))))))).....((....))))))((((.......)))).))).))).)))).... ( -40.90) >consensus GGG_GGGUACAUUCGGG___GGGCUUCCCAACUGCUGCACGUAAGGCACGACUUUUUAUUAUGCUUUACGUUCUUGGCUCUCGCGUUGGGGCCAACGGCGCCCACCCGCCUGCGCUUUUU .....((((((..((((...((((................((((((((..(.......)..))))))))((..((((((((......))))))))..)))))).))))..)))))).... (-37.17 = -38.30 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:15 2006