Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,529,364 – 1,529,466 |
Length | 102 |
Max. P | 0.921543 |
Location | 1,529,364 – 1,529,466 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 89.76 |
Mean single sequence MFE | -31.02 |
Consensus MFE | -25.72 |
Energy contribution | -26.24 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.08 |
Mean z-score | -1.56 |
Structure conservation index | 0.83 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.783971 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1529364 102 + 22224390 UGAGCUCUGCAUCUCCCUUCUCCCAGUGGGGCGAGGGUUUU-----GGUUUGGUUUUAGAUCGCCAUUAGAUCGUUAUUAGAUCGUGAUCGUGAUCGCGAUGCUAAA ..(((..(((.....(((((.(((....))).)))))....-----............((((((.((((((((.......)))).)))).)))))))))..)))... ( -33.50) >DroSec_CAF1 2351 96 + 1 UGAGCUCUGCAUCUCCCUUCUCCCAGUGGGGCGAGGGUUUU-----GGUUUGGUUUUAGAUCGCCAUUAGAUCGUUAUUAGAUCGU------GAUCGCGAUGCUAAA .(((((..((....(((((.((((...)))).)))))....-----.))..)))))((((((((.((((((((.......)))).)------))).))))).))).. ( -31.40) >DroSim_CAF1 1806 102 + 1 UGAGCUCUGCAUCUCCCUUCUCCCAGUGGGGCGAGGGUUUU-----GGUUUGGUUUUAGAUCGCCAUUAGAUCGUUAUUAGAUCGUGAUCGUGAUCGCGAUGCUAAA ..(((..(((.....(((((.(((....))).)))))....-----............((((((.((((((((.......)))).)))).)))))))))..)))... ( -33.50) >DroEre_CAF1 2433 101 + 1 UGAUUUCUGCACCUCCCUUCUCCCAGUGGGGCGAGGGUUUUGGUUUGGUUUGGUUUUAAAUCGUCAUUAGAUCGAUACUAGAUCGU------GUUCGCGAUGCCAAA ......(((.(((.(((((.((((...)))).)))))....))).)))((((((.....(((((.....((((.......))))..------....))))))))))) ( -27.40) >DroYak_CAF1 2319 97 + 1 UGAGCUCUGCACCUCCCUUCUCCCAGUGGGGCGAGGGUUUU----CGGUUUGGUUUUAGAUCGUCAUUAGAUCGAUAUUAGAUCGU------GAUCGCGAUUCUAAA .(((((..((....(((((.((((...)))).)))))....----..))..)))))((((((((.((((((((.......)))).)------))).)))).)))).. ( -29.30) >consensus UGAGCUCUGCAUCUCCCUUCUCCCAGUGGGGCGAGGGUUUU_____GGUUUGGUUUUAGAUCGCCAUUAGAUCGUUAUUAGAUCGU______GAUCGCGAUGCUAAA ..(((..(((.....(((((.(((....))).))))).........((((((((....((((.......))))...))))))))............)))..)))... (-25.72 = -26.24 + 0.52)
Location | 1,529,364 – 1,529,466 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 89.76 |
Mean single sequence MFE | -24.50 |
Consensus MFE | -21.74 |
Energy contribution | -21.74 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.10 |
Mean z-score | -1.61 |
Structure conservation index | 0.89 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.921543 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1529364 102 - 22224390 UUUAGCAUCGCGAUCACGAUCACGAUCUAAUAACGAUCUAAUGGCGAUCUAAAACCAAACC-----AAAACCCUCGCCCCACUGGGAGAAGGGAGAUGCAGAGCUCA ....(((((..((((.(.((...((((.......))))..)).).))))............-----....(((((.(((....))).).)))).)))))........ ( -27.30) >DroSec_CAF1 2351 96 - 1 UUUAGCAUCGCGAUC------ACGAUCUAAUAACGAUCUAAUGGCGAUCUAAAACCAAACC-----AAAACCCUCGCCCCACUGGGAGAAGGGAGAUGCAGAGCUCA (((((.(((((.((.------..((((.......))))..)).))))))))))........-----....(((((.(((....))).).)))).((.((...)))). ( -25.00) >DroSim_CAF1 1806 102 - 1 UUUAGCAUCGCGAUCACGAUCACGAUCUAAUAACGAUCUAAUGGCGAUCUAAAACCAAACC-----AAAACCCUCGCCCCACUGGGAGAAGGGAGAUGCAGAGCUCA ....(((((..((((.(.((...((((.......))))..)).).))))............-----....(((((.(((....))).).)))).)))))........ ( -27.30) >DroEre_CAF1 2433 101 - 1 UUUGGCAUCGCGAAC------ACGAUCUAGUAUCGAUCUAAUGACGAUUUAAAACCAAACCAAACCAAAACCCUCGCCCCACUGGGAGAAGGGAGGUGCAGAAAUCA ....(((((......------..((((.......))))................................(((((.(((....))).).)))).)))))........ ( -21.10) >DroYak_CAF1 2319 97 - 1 UUUAGAAUCGCGAUC------ACGAUCUAAUAUCGAUCUAAUGACGAUCUAAAACCAAACCG----AAAACCCUCGCCCCACUGGGAGAAGGGAGGUGCAGAGCUCA ....((.((((((((------.((((.....)))).((....)).)))).........(((.----....(((((.(((....))).).)))).))))).))..)). ( -21.80) >consensus UUUAGCAUCGCGAUC______ACGAUCUAAUAACGAUCUAAUGGCGAUCUAAAACCAAACC_____AAAACCCUCGCCCCACUGGGAGAAGGGAGAUGCAGAGCUCA ....(((((..((((........((((.......)))).......)))).....................(((((.(((....))).).)))).)))))........ (-21.74 = -21.74 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:10 2006