Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,925,197 – 13,925,317 |
Length | 120 |
Max. P | 0.998610 |
Location | 13,925,197 – 13,925,317 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.50 |
Mean single sequence MFE | -34.48 |
Consensus MFE | -33.42 |
Energy contribution | -33.58 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.02 |
Mean z-score | -2.21 |
Structure conservation index | 0.97 |
SVM decision value | 3.16 |
SVM RNA-class probability | 0.998610 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13925197 120 + 22224390 UUCGCUGGAUCCCCCCAAUGAUGAUGAAUUGCAUUUUGCACACUUUAAUUGGAUGAAUGUGUAAUUAAGUUGUGUGCCAGUUCAUAAAUUGAAUGCAGCUCCAGCUCAACAGAUCUCGCA ...((.(((((....((((....((((((((......((((((((((((((.((....)).))))))))..))))))))))))))..))))..((.(((....)))))...))))).)). ( -33.40) >DroSec_CAF1 5381 120 + 1 UUCGCUGGAUCCCCCCAAUGAUGAUGAAUUGCAUUUUGCACACUUUAAUUGGAUGAAUGUGUAAUUAAGUUGUGUGCCAGUUCAUAAAUUGAAUGCAGCUCCAGCUCAGCAGAUCUCGCA ...((.(((((....((((....((((((((......((((((((((((((.((....)).))))))))..))))))))))))))..))))..((((((....)))..)))))))).)). ( -34.90) >DroSim_CAF1 7324 120 + 1 UUCGCUGGAUCCCCCCAAUGAUGAUGAAUUGCAUUUUGCACACUUUAAUUGGAUGAAUGUGUAAUUAAGUUGUGUGCCAGUUCAUAAAUUGAAUGCAGCUCCAGCUCAGCAGAUCUCGCA ...((.(((((....((((....((((((((......((((((((((((((.((....)).))))))))..))))))))))))))..))))..((((((....)))..)))))))).)). ( -34.90) >DroEre_CAF1 7252 120 + 1 CUCGCUGGAUCCCCCCGAUGAUGAUGAAUUGCAUUUUGCACACUUUAAUUGGAUGAAUGUGUAAUUAAGUUGUGUGCCAGUUCAUAAAUUGAAUGCAGCUCCAGCGCAGCAGAUCUCGCA ...((.(((((....((((....((((((((......((((((((((((((.((....)).))))))))..))))))))))))))..))))..(((.((......)).)))))))).)). ( -34.60) >DroYak_CAF1 6833 120 + 1 UUCGCUGGAUCCCCCCGAUGAUGAUGAAUUGCAUUUUGCACACUUUAAUUGGAUGAAUGUGUAAUUAAGUUGUGUGCCAGUUCAUAAAUUGAAUGCAGCUCCAGCUCAGCAGAUCUCGCA ...((.(((((....((((....((((((((......((((((((((((((.((....)).))))))))..))))))))))))))..))))..((((((....)))..)))))))).)). ( -34.60) >consensus UUCGCUGGAUCCCCCCAAUGAUGAUGAAUUGCAUUUUGCACACUUUAAUUGGAUGAAUGUGUAAUUAAGUUGUGUGCCAGUUCAUAAAUUGAAUGCAGCUCCAGCUCAGCAGAUCUCGCA ...((.(((((....((((....((((((((......((((((((((((((.((....)).))))))))..))))))))))))))..))))..((((((....)))..)))))))).)). (-33.42 = -33.58 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:18 2006