Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,924,730 – 13,924,839 |
Length | 109 |
Max. P | 0.737376 |
Location | 13,924,730 – 13,924,839 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.07 |
Mean single sequence MFE | -28.13 |
Consensus MFE | -20.10 |
Energy contribution | -20.70 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.91 |
Structure conservation index | 0.71 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.737376 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13924730 109 - 22224390 CGAUAUAAUUCCCAUCAAUCGGGGGAAUUUGCUGGAGACAGCUGCCUGCCACAUCGCACUUCAUAUUUGUGGCAGCUCCUCAAGAGCUAAUUUAAAUGCAU-------UAUA----AUAC ......(((((((.((....))))))))).((((....))))(((..((((((..............))))))(((((.....))))).........))).-------....----.... ( -32.84) >DroSec_CAF1 4915 108 - 1 CGAUAUAAUUCACAUCAAUCGGGGGAAUUCGCUGGAGACAGCUGCCUGCCAAAUCGCACUUCAUAUUUGUGGCAAC-CCUCAAGAGUUAAUUUAAAUGCAU-------UAUA----AUAC ...((((((.((........(((((.....((((....))))((((...(((((..........))))).)))).)-)))).(((.....)))...)).))-------))))----.... ( -24.70) >DroSim_CAF1 6882 108 - 1 CGAUAUAAUUCCCAUCAAUCGGGGGAAUUCGCUGGAGACAGCUGCCUGCCAAAUCGCACUUCAUAUUUGUGGCAAC-CCUCAAGAGUUAAUUUAAAUGCAU-------UAUA----AUAC ...((((((...........(((((.....((((....))))((((...(((((..........))))).)))).)-))))....((..........))))-------))))----.... ( -24.10) >DroEre_CAF1 6740 110 - 1 CGAUAUAAUUCGCAUCAAUCGGGGGAAUUUGCUGGAGACAGCUGCGUGCCACAUCGCACUUCAUGCUUGUGGCAAC-CCUCAAGAGUUG-----AAUGCAUUUAGCCAUACA----AUAU .((......))((((((((.(((((.....((((....))))....(((((((..(((.....))).))))))).)-))))....))))-----.)))).............----.... ( -36.70) >DroYak_CAF1 6357 107 - 1 CGAUAUAAUUCCCAUCAAUCGGGGGAAUUUGCUGCAGACAGCUGCCUGCCACAUCGCACUUCAUAUUUGUGUCAAC-CCUCAGAAGUUA-----AAUG-------CCAUACAUGACACAC ((((..(((((((.((....))))))))).((.((((....))))..))...))))...........(((((((((-........))).-----.(((-------.....))))))))). ( -22.30) >consensus CGAUAUAAUUCCCAUCAAUCGGGGGAAUUUGCUGGAGACAGCUGCCUGCCACAUCGCACUUCAUAUUUGUGGCAAC_CCUCAAGAGUUAAUUUAAAUGCAU_______UAUA____AUAC ((((.............))))((((.....((((....))))....(((((((..............)))))))...))))....................................... (-20.10 = -20.70 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:17 2006