Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,923,439 – 13,923,549 |
Length | 110 |
Max. P | 0.685483 |
Location | 13,923,439 – 13,923,549 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 82.30 |
Mean single sequence MFE | -21.63 |
Consensus MFE | -17.19 |
Energy contribution | -17.30 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -1.65 |
Structure conservation index | 0.79 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.685483 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13923439 110 + 22224390 GGUUAAUGAAAUGAGGGAAUAUUCUUUGGGAGACUAUCACCAAGCUAUGUUCAUUCAAUGCCUUCAAUUGAGUUAUGAAUAGACUAUGCAAUUAUAUGAUGUCAAUUAAU (((...((((......((((((..(((((((.....)).)))))..)))))).))))..)))...(((((((((((((((.(......).))).)))))).))))))... ( -19.40) >DroSec_CAF1 3652 102 + 1 GGUUAAUAAAAUGAGGGAAUAUUCCUUGGGAAACUAUCACCAAGUUAUGUUCAUUCAAUGCCUUCAAUUGAGUAAUGAAUUCA--------UUAAAUGAGUUCACUAAAU ................((((((..(((((((.....)).)))))..))))))(((((((.......)))))))..((((((((--------(...)))))))))...... ( -25.10) >DroSim_CAF1 5605 95 + 1 GGUUAAUAAAAUGAGGGAAUAUUCCUUGGGAAACUAUCACCAAGUUAUGUUCAUUCAAUGCCUUCAAUAGAGUAAUGAAUAGA---------------CGUUCACUAAAU ...........((((.((((((..(((((((.....)).)))))..))))))(((((.(((((.....)).))).)))))...---------------..))))...... ( -20.40) >consensus GGUUAAUAAAAUGAGGGAAUAUUCCUUGGGAAACUAUCACCAAGUUAUGUUCAUUCAAUGCCUUCAAUUGAGUAAUGAAUAGA________UUA_AUGAGUUCACUAAAU ...........(((..((((((..(((((((.....)).)))))..))))))(((((.((((.......).))).))))).....................)))...... (-17.19 = -17.30 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:15 2006