Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,922,972 – 13,923,090 |
Length | 118 |
Max. P | 0.981881 |
Location | 13,922,972 – 13,923,090 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.99 |
Mean single sequence MFE | -31.00 |
Consensus MFE | -29.42 |
Energy contribution | -29.42 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.85 |
Structure conservation index | 0.95 |
SVM decision value | 1.90 |
SVM RNA-class probability | 0.981881 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13922972 118 - 22224390 --UGCUGCGAGUUGAAAUGAAUGUGGUAAGCAAAACAUUAACUUGGCCGUCAUUAUUGUUGGCUCGGAGCGAAUUACGUUCUUUAAGUGAGAAAAAUUGCAAUUUAAUCGCGAUUAUGAU --.(((.(((((..(....(((((((((((...........))).)))).))))....)..))))).)))........(((((.....))))).((((((.........))))))..... ( -29.80) >DroSec_CAF1 3169 118 - 1 --UGCUGCGAGUUGAAAUGAAUGUGGUAAGCAAAACAUUAACUUGGCCGUCAUUAUUGUUGGCUCGGAGCGAAUUACGUUCUUUAAGUGAGAAAAAUUGCAAUUUAAUCGCGAUUAUGAU --.(((.(((((..(....(((((((((((...........))).)))).))))....)..))))).)))........(((((.....))))).((((((.........))))))..... ( -29.80) >DroSim_CAF1 5127 118 - 1 --UGCUGCGAGUUGAAAUGAAUGUGGUAAGCAAAACAUUAACUUGGCCGUCAUUAUUGUUGGCUCGGAGCGAAUUACGUUCUUUAAGUGAGAAAAAUUGCAAUUUAAUCGCGAUUAUGAU --.(((.(((((..(....(((((((((((...........))).)))).))))....)..))))).)))........(((((.....))))).((((((.........))))))..... ( -29.80) >DroEre_CAF1 5122 118 - 1 --UGCUGCGAGUUGAAAUGAAUGUGGUAAGCAAAACAUUAACUUGGCCGUCAUUAUUGUUGGCUCGGAGCGAAUUACGUUCUUUAAGUGAGAAAAAUUGCAAUUUAAUCGCGAUUAUGAU --.(((.(((((..(....(((((((((((...........))).)))).))))....)..))))).)))........(((((.....))))).((((((.........))))))..... ( -29.80) >DroYak_CAF1 4629 120 - 1 GUUGCUGCGAGUUGAAAUGAAUGUGGUAAGCAAAACAUUAACUUGGCCGUCAUUAUUGUUGGCUCGCAGCGAAUUACGUUCUUUAAGUGAGAAAAAUUGCAAUUUAAUCGCGAUUAUGAU .(((((((((((..(....(((((((((((...........))).)))).))))....)..)))))))))))......(((((.....))))).((((((.........))))))..... ( -35.80) >consensus __UGCUGCGAGUUGAAAUGAAUGUGGUAAGCAAAACAUUAACUUGGCCGUCAUUAUUGUUGGCUCGGAGCGAAUUACGUUCUUUAAGUGAGAAAAAUUGCAAUUUAAUCGCGAUUAUGAU ..((((.(((((..(....(((((((((((...........))).)))).))))....)..))))).)))).......(((((.....))))).((((((.........))))))..... (-29.42 = -29.42 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:14 2006