Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,906,528 – 13,906,642 |
Length | 114 |
Max. P | 0.864396 |
Location | 13,906,528 – 13,906,642 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 93.67 |
Mean single sequence MFE | -29.88 |
Consensus MFE | -26.96 |
Energy contribution | -27.27 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.03 |
Mean z-score | -1.80 |
Structure conservation index | 0.90 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.864396 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13906528 114 - 22224390 UUCAAAUCUUUGACACAACUUUGCCGUCAGAGUGGAAGUCGCCGUUGAAGUUGAAGUUGCGGCUAAAGACGUUGAAAUGUUGCACAUUUUGAUGUUUGAUGUUUGAUGUUUGAU .((((((.((.(((((((((((((((.(((..(.((..(((....)))..)).)..))))))).))))((((..(((((.....)))))..))))))).)))).)).)))))). ( -32.40) >DroSec_CAF1 6967 107 - 1 UUCAAAUCUUUGACACAACUUUGCCGUCAGAGUGGAAGUCGCCGUUGAAGUUGAAGUUGCGGCUAAAGACGUUGAAAUGUUGCACAUUUUGAUGUUU-------GAUGUUUGAU .(((((((((((((.((....))..))))))).....((((((((.............)))))...((((((..(((((.....)))))..))))))-------))))))))). ( -29.82) >DroSim_CAF1 28753 107 - 1 UUCAAAUCUUUGACACAACUUUGCCGUCAGAGUGGAAGUCGCCGUUGAAGUUGAAGUUGCGGCUAAAGACGUUGAAAUGUUGCACAUUUUGAUGUUU-------GAUGUUUGAU .(((((((((((((.((....))..))))))).....((((((((.............)))))...((((((..(((((.....)))))..))))))-------))))))))). ( -29.82) >DroYak_CAF1 17072 107 - 1 UUCAAAACUUUGACACAACUUUGCAGUCAGAGUGGUAAUCGCAGUUGAAGUUGAAGUCGCGACUAAAGACGUUGAAAUGUUGCACAUUUUGAUGUUU-------GAUGUUUGAU ((((..((((..((...((((((....)))))).((....)).))..))))))))((((.(((...((((((..(((((.....)))))..))))))-------...))))))) ( -27.50) >consensus UUCAAAUCUUUGACACAACUUUGCCGUCAGAGUGGAAGUCGCCGUUGAAGUUGAAGUUGCGGCUAAAGACGUUGAAAUGUUGCACAUUUUGAUGUUU_______GAUGUUUGAU .(((((((((((((.((....))..)))))))....((((((..((........))..))))))..((((((..(((((.....)))))..))))))..........)))))). (-26.96 = -27.27 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:47 2006