Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,871,950 – 13,872,084 |
Length | 134 |
Max. P | 0.966666 |
Location | 13,871,950 – 13,872,044 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 86.90 |
Mean single sequence MFE | -33.13 |
Consensus MFE | -26.37 |
Energy contribution | -26.37 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.56 |
Structure conservation index | 0.80 |
SVM decision value | 1.60 |
SVM RNA-class probability | 0.966666 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13871950 94 + 22224390 AAAAUGCCAAACUCGCAUUGUUGUUGC---UGCAGUUGUUGUUUCGUGUUGCGUUCG-GCAGCGAGACAAACAAAAGCAACAACAACGUCACCAACGG ..(((((.......)))))((((((((---(....((((((((((((..(((.....-)))))))))).))))).)))))))))..(((.....))). ( -32.60) >DroSec_CAF1 17371 95 + 1 NNNNNNNNNNNNNNGCAUUGUUGUUGC---UGCAGUUGUUGUUUCGUGUUGCGUUCGCGCAGCGAGACAAACAAAAGCAACAACAACGUCACCAACGG .................((((((((((---(....((((((((((((..((((....))))))))))).))))).)))))))))))(((.....))). ( -34.20) >DroEre_CAF1 15154 97 + 1 AAAAUGCCAAACUCGCAUUGUUGUUGCUGCUGCUGUUGUUGUUUCGUGUUGCGUUCG-GCAGCGAGACAAACAAAAGCAACAACAACGUCACCAACGG ..(((((.......)))))(((((((.((((..((((..((((((((..(((.....-)))))))))))))))..)))).)))))))........... ( -32.60) >consensus AAAAUGCCAAACUCGCAUUGUUGUUGC___UGCAGUUGUUGUUUCGUGUUGCGUUCG_GCAGCGAGACAAACAAAAGCAACAACAACGUCACCAACGG .................((((((((((........((((((((((((..(((......)))))))))).)))))..))))))))))(((.....))). (-26.37 = -26.37 + -0.00)
Location | 13,871,950 – 13,872,044 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 86.90 |
Mean single sequence MFE | -32.50 |
Consensus MFE | -23.80 |
Energy contribution | -23.80 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.39 |
Structure conservation index | 0.73 |
SVM decision value | 1.27 |
SVM RNA-class probability | 0.938757 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13871950 94 - 22224390 CCGUUGGUGACGUUGUUGUUGCUUUUGUUUGUCUCGCUGC-CGAACGCAACACGAAACAACAACUGCA---GCAACAACAAUGCGAGUUUGGCAUUUU .....(....)(((((((((((..(((((.((.(((.(((-.....)))...))).)))))))..)))---))))))))(((((.......))))).. ( -31.80) >DroSec_CAF1 17371 95 - 1 CCGUUGGUGACGUUGUUGUUGCUUUUGUUUGUCUCGCUGCGCGAACGCAACACGAAACAACAACUGCA---GCAACAACAAUGCNNNNNNNNNNNNNN .(((((....)(((((((((((..(((((.((.(((.((((....))))...))).)))))))..)))---))))))))))))............... ( -31.60) >DroEre_CAF1 15154 97 - 1 CCGUUGGUGACGUUGUUGUUGCUUUUGUUUGUCUCGCUGC-CGAACGCAACACGAAACAACAACAGCAGCAGCAACAACAAUGCGAGUUUGGCAUUUU ..((((....)((((((((((((.(((((.((.(((.(((-.....)))...))).))))))).)))))))))))))))(((((.......))))).. ( -34.10) >consensus CCGUUGGUGACGUUGUUGUUGCUUUUGUUUGUCUCGCUGC_CGAACGCAACACGAAACAACAACUGCA___GCAACAACAAUGCGAGUUUGGCAUUUU .(((((....)(((((((((((..(((((.((.(((.(((......)))...))).)))))))..)))...))))))))))))............... (-23.80 = -23.80 + 0.00)
Location | 13,871,977 – 13,872,084 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 97.52 |
Mean single sequence MFE | -29.34 |
Consensus MFE | -27.00 |
Energy contribution | -27.00 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.84 |
Structure conservation index | 0.92 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.661063 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13871977 107 + 22224390 UGCAGUUGUUGUUUCGUGUUGCGUUCG-GCAGCGAGACAAACAAAAGCAACAACAACGUCACCAACGGAGCAAAAAUCGCCCCUUUUAGCAAAAAACGCAGGAAAGGA (((.((((((((((..((((...((((-....))))...)))).))))))))))..(((.....)))..))).........((((((.((.......))..)))))). ( -29.00) >DroSec_CAF1 17398 108 + 1 UGCAGUUGUUGUUUCGUGUUGCGUUCGCGCAGCGAGACAAACAAAAGCAACAACAACGUCACCAACGGAGCAAAAAUCGCCCCUUUUGGCAAAAAACGCAGCAAAGGA (((.((((((((((..((((...(((((...)))))...)))).))))))))))..(((.....)))..))).........(((((..((.......))...))))). ( -30.10) >DroEre_CAF1 15184 107 + 1 UGCUGUUGUUGUUUCGUGUUGCGUUCG-GCAGCGAGACAAACAAAAGCAACAACAACGUCACCAACGGAGCAAAAAUCGCCCCUUUUGGCAAAAAACGCAGCAAAGGA ((((((..((((((((((((((.....-)))))..(((...................)))....))))))))).....(((......))).......))))))..... ( -28.91) >consensus UGCAGUUGUUGUUUCGUGUUGCGUUCG_GCAGCGAGACAAACAAAAGCAACAACAACGUCACCAACGGAGCAAAAAUCGCCCCUUUUGGCAAAAAACGCAGCAAAGGA (((.((((((((((..((((...((((.....))))...)))).))))))))))..(((.....)))..))).........(((((..((.......))...))))). (-27.00 = -27.00 + 0.00)
Location | 13,871,977 – 13,872,084 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 97.52 |
Mean single sequence MFE | -34.30 |
Consensus MFE | -32.65 |
Energy contribution | -32.43 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -2.18 |
Structure conservation index | 0.95 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.898881 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13871977 107 - 22224390 UCCUUUCCUGCGUUUUUUGCUAAAAGGGGCGAUUUUUGCUCCGUUGGUGACGUUGUUGUUGCUUUUGUUUGUCUCGCUGC-CGAACGCAACACGAAACAACAACUGCA ................(..((((..(((((((...))))))).))))..).((.(((((((.((((((((((.(((....-)))..)))).))))))))))))).)). ( -30.10) >DroSec_CAF1 17398 108 - 1 UCCUUUGCUGCGUUUUUUGCCAAAAGGGGCGAUUUUUGCUCCGUUGGUGACGUUGUUGUUGCUUUUGUUUGUCUCGCUGCGCGAACGCAACACGAAACAACAACUGCA .....(((.(((((....(((((..(((((((...))))))).)))))))))).(((((((.((((((((((.((((...))))..)))).))))))))))))).))) ( -36.60) >DroEre_CAF1 15184 107 - 1 UCCUUUGCUGCGUUUUUUGCCAAAAGGGGCGAUUUUUGCUCCGUUGGUGACGUUGUUGUUGCUUUUGUUUGUCUCGCUGC-CGAACGCAACACGAAACAACAACAGCA ................(..((((..(((((((...))))))).))))..).((((((((((.((((((((((.(((....-)))..)))).)))))))))))))))). ( -36.20) >consensus UCCUUUGCUGCGUUUUUUGCCAAAAGGGGCGAUUUUUGCUCCGUUGGUGACGUUGUUGUUGCUUUUGUUUGUCUCGCUGC_CGAACGCAACACGAAACAACAACUGCA .........((.....(..((((..(((((((...))))))).))))..)....(((((((.((((((((((.(((.....)))..)))).))))))))))))).)). (-32.65 = -32.43 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:26 2006