Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,870,349 – 13,870,469 |
Length | 120 |
Max. P | 0.805459 |
Location | 13,870,349 – 13,870,469 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.50 |
Mean single sequence MFE | -31.02 |
Consensus MFE | -27.30 |
Energy contribution | -27.80 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.01 |
Structure conservation index | 0.88 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.685030 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13870349 120 + 22224390 AAAUGACAUUAAAUUGUGCGCAAAAUAGCGGCAAAUAAAAUUUUACUGCGACUUUUUUGCGCUGCUUUUCUCGUCUGGCGCACAAAUGUAUGCAAUAUGUGGCAUUAGAAAUCCGCAUUA ...((.(((....((((((((.....(((((((((......)))...((((.....))))))))))...........))))))))....)))))..((((((.((.....)))))))).. ( -28.89) >DroSec_CAF1 15754 120 + 1 AAAUGGCAUUAAAUUGUGCGCAAAAUAGCGGCAAAUAAAAUUUUACUGCGACUUUUUUGCGCUGCUUUUCUCGUUUGGCGCACAAAUGUAUGCAAUAUGUGGCAUUAGAAAUCCGCAUUA .....((((....((((((((.(((((((((((((......)))...((((.....))))))))))......)))).))))))))....))))...((((((.((.....)))))))).. ( -33.30) >DroEre_CAF1 13505 120 + 1 AAAUGGCAUUAAAUUGUGCGCAAAAUAGCGGCAAAUAAAAUUUUACUGCGACUUUUUUGCGAUGCUUUUCUCGUCUGGCGCACAAAUGUAUGCAAUACGUGGCACUAGAAAUCCGCAUUA .....((((......))))((((((..((((.(((......))).)))).....))))))(((((........(((((.((....((((((...)))))).)).))))).....))))). ( -30.22) >DroYak_CAF1 16105 120 + 1 AAAUGGCAUUAAAUUGUGCGCAAAAUAGCGGCAAAUAAAAUUUUACUGCGACUUUUUUGCGCUGCUUUUCUCGUCUGGCGCACAAAUGUAUGCAAUAUGUGGCAUUCGAAAUCCGCAUUA .....((((....((((((((.....(((((((((......)))...((((.....))))))))))...........))))))))....))))...((((((.((.....)))))))).. ( -31.69) >consensus AAAUGGCAUUAAAUUGUGCGCAAAAUAGCGGCAAAUAAAAUUUUACUGCGACUUUUUUGCGCUGCUUUUCUCGUCUGGCGCACAAAUGUAUGCAAUAUGUGGCAUUAGAAAUCCGCAUUA .....((((....((((((((((((..((((.(((......))).)))).....))))))...(((..........)))))))))....))))...((((((..........)))))).. (-27.30 = -27.80 + 0.50)
Location | 13,870,349 – 13,870,469 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.50 |
Mean single sequence MFE | -29.91 |
Consensus MFE | -27.06 |
Energy contribution | -27.12 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.03 |
Mean z-score | -2.10 |
Structure conservation index | 0.90 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.805459 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13870349 120 - 22224390 UAAUGCGGAUUUCUAAUGCCACAUAUUGCAUACAUUUGUGCGCCAGACGAGAAAAGCAGCGCAAAAAAGUCGCAGUAAAAUUUUAUUUGCCGCUAUUUUGCGCACAAUUUAAUGUCAUUU ...(((...(((((...((((((...((....))..)))).))......))))).)))((((((((.(((.((((...........)))).))).))))))))................. ( -29.50) >DroSec_CAF1 15754 120 - 1 UAAUGCGGAUUUCUAAUGCCACAUAUUGCAUACAUUUGUGCGCCAAACGAGAAAAGCAGCGCAAAAAAGUCGCAGUAAAAUUUUAUUUGCCGCUAUUUUGCGCACAAUUUAAUGCCAUUU ...(((...(((((...((((((...((....))..)))).))......))))).)))((((((((.(((.((((...........)))).))).))))))))................. ( -29.50) >DroEre_CAF1 13505 120 - 1 UAAUGCGGAUUUCUAGUGCCACGUAUUGCAUACAUUUGUGCGCCAGACGAGAAAAGCAUCGCAAAAAAGUCGCAGUAAAAUUUUAUUUGCCGCUAUUUUGCGCACAAUUUAAUGCCAUUU .((((((..............))))))((((....((((((((..(.(((........))))...(((((.((.(((((......))))).)).)))))))))))))....))))..... ( -29.14) >DroYak_CAF1 16105 120 - 1 UAAUGCGGAUUUCGAAUGCCACAUAUUGCAUACAUUUGUGCGCCAGACGAGAAAAGCAGCGCAAAAAAGUCGCAGUAAAAUUUUAUUUGCCGCUAUUUUGCGCACAAUUUAAUGCCAUUU ...(((...(((((..(((((((...((....))..)))).).))..)))))...)))((((((((.(((.((((...........)))).))).))))))))................. ( -31.50) >consensus UAAUGCGGAUUUCUAAUGCCACAUAUUGCAUACAUUUGUGCGCCAGACGAGAAAAGCAGCGCAAAAAAGUCGCAGUAAAAUUUUAUUUGCCGCUAUUUUGCGCACAAUUUAAUGCCAUUU ...(((...((((....((((((...((....))..)))).)).....))))...)))((((((((.(((.((((...........)))).))).))))))))................. (-27.06 = -27.12 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:21 2006