Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,854,743 – 13,854,862 |
Length | 119 |
Max. P | 0.972420 |
Location | 13,854,743 – 13,854,862 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.90 |
Mean single sequence MFE | -28.29 |
Consensus MFE | -27.30 |
Energy contribution | -27.14 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -1.46 |
Structure conservation index | 0.97 |
SVM decision value | 1.69 |
SVM RNA-class probability | 0.972420 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13854743 119 + 22224390 GAGUUGCAGGCGACUUUGUCUAUGCUGCAAAAGAAUGCCUUUGGGGCAUUUAGAUAAAAAAUACAUGAAGGAGCCAAAGUCAAGCCAAAGGAUACUAAAAAACAGAUGAGCAUGGGCG-G ((((((....))))))((((((((((.((...(((((((.....))))))).................((...((..............))...))..........))))))))))))-. ( -28.64) >DroSec_CAF1 2969 108 + 1 GAGUUGCAGGCGACUUUGUCUAUGCUGCAAAAGAAUGCCUUUGGGGCAUUUAGAUAAAAAAUACAUGAAGGAGCC-----------AAAGGAUACUAAAAAACAGAUGGGCAUGGGCG-G ((((((....))))))((((((((((......(((((((.....))))))).................((...((-----------...))...))............))))))))))-. ( -27.60) >DroSim_CAF1 7667 108 + 1 GAGUUGCAGGCGACUUUGUCUAUGCUGCAAAAGAAUGCCUUUGGGGCAUUUAGAUAAAAAAUACAUGAAGGAGCC-----------AAAGGAUACUAAAAAACAGAUGGGCAUGGGCG-G ((((((....))))))((((((((((......(((((((.....))))))).................((...((-----------...))...))............))))))))))-. ( -27.60) >DroEre_CAF1 2892 119 + 1 GAGUUGCUGGCGACUUUGUCUAUGCUGCAGAAGAAUGCCUUUGGGGCAUUUAGAUAAAAAAUACAUGAAGGAGCCAAAGUCAAGCCAAAGGAUACUAAAAAACAGAUGGGCAUGGGCG-G ((((((....))))))(((((((((((((......)))(((((((((.((((..((.....))..))))...))).........))))))..................))))))))))-. ( -28.80) >DroYak_CAF1 5068 120 + 1 GAGUUGCAGGCGACUUUGUCUAUGCUGCAGAAGAAUGCCUUUGGGGCAUUUAGAUAAAAAAUACAUGAAGGAGCCAAAGUCAAGCCAAAGGAUACUAAAAAACAGAUGGGCAUGGGCGGG ((((((....))))))(((((((((((((......)))(((((((((.((((..((.....))..))))...))).........))))))..................)))))))))).. ( -28.80) >consensus GAGUUGCAGGCGACUUUGUCUAUGCUGCAAAAGAAUGCCUUUGGGGCAUUUAGAUAAAAAAUACAUGAAGGAGCCAAAGUCAAGCCAAAGGAUACUAAAAAACAGAUGGGCAUGGGCG_G ((((((....)))))).(((((((((......(((((((.....))))))).................((...((..............))...))............)))))))))... (-27.30 = -27.14 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:07 2006