Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,853,515 – 13,853,660 |
Length | 145 |
Max. P | 0.931947 |
Location | 13,853,515 – 13,853,635 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 99.50 |
Mean single sequence MFE | -35.00 |
Consensus MFE | -35.00 |
Energy contribution | -35.00 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.56 |
Structure conservation index | 1.00 |
SVM decision value | 1.22 |
SVM RNA-class probability | 0.931947 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13853515 120 + 22224390 CUGCGUUACGCUCGUCACAUUUUAUUAGCCAGUUUGCAGGCUGCAGGACAUUGAACGUCUGUCUCCCUGCGCGAGUCCUUUGUGUCGCAAUAAAUAACACACACAUCAGUGUGUUAGUGU .((((.(((((((((...........((((........))))((((((((.........)))...))))))))))).....))).)))).....((((((((......)))))))).... ( -35.00) >DroSec_CAF1 1753 120 + 1 CUGCGUUACGCUCGUCACAUUUUAUUAGCCAGUUUGCAGGCUGCAGGACAUUGAACGUCUGUCUCCCUGCGCGAGUCCUUUGUGUCGCAAUAAAUAACACACACAUCAGUGUGUUAAUGU .((((.(((((((((...........((((........))))((((((((.........)))...))))))))))).....))).)))).....((((((((......)))))))).... ( -35.00) >DroSim_CAF1 6384 120 + 1 CUGCGUUACGCUCGUCACAUUUUAUUAGCCAGUUUGCAGGCUGCAGGACAUUGAACGUCUGUCUCCCUGCGCGAGUCCUUUGUGUCGCAAUAAAUAACACACACAUCAGUGUGUUAAUGU .((((.(((((((((...........((((........))))((((((((.........)))...))))))))))).....))).)))).....((((((((......)))))))).... ( -35.00) >DroEre_CAF1 1708 120 + 1 CUGCGUUACGCUCGUCACAUUUUAUUAGCCAGUUUGCAGGCUGCAGGACAUUGAACGUCUGUCUCCCUGCGCGAGUCCUUUGUGUCGCAAUAAAUAACACACACAUCAGUGUGUUAGUGU .((((.(((((((((...........((((........))))((((((((.........)))...))))))))))).....))).)))).....((((((((......)))))))).... ( -35.00) >DroYak_CAF1 3749 120 + 1 CUGCGUUACGCUCGUCACAUUUUAUUAGCCAGUUUGCAGGCUGCAGGACAUUGAACGUCUGUCUCCCUGCGCGAGUCCUUUGUGUCGCAAUAAAUAACACACACAUCAGUGUGUUAGUGU .((((.(((((((((...........((((........))))((((((((.........)))...))))))))))).....))).)))).....((((((((......)))))))).... ( -35.00) >consensus CUGCGUUACGCUCGUCACAUUUUAUUAGCCAGUUUGCAGGCUGCAGGACAUUGAACGUCUGUCUCCCUGCGCGAGUCCUUUGUGUCGCAAUAAAUAACACACACAUCAGUGUGUUAGUGU .((((.(((((((((...........((((........))))((((((((.........)))...))))))))))).....))).)))).....((((((((......)))))))).... (-35.00 = -35.00 + 0.00)
Location | 13,853,515 – 13,853,635 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 99.50 |
Mean single sequence MFE | -34.92 |
Consensus MFE | -34.74 |
Energy contribution | -34.74 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.45 |
Structure conservation index | 0.99 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.864565 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13853515 120 - 22224390 ACACUAACACACUGAUGUGUGUGUUAUUUAUUGCGACACAAAGGACUCGCGCAGGGAGACAGACGUUCAAUGUCCUGCAGCCUGCAAACUGGCUAAUAAAAUGUGACGAGCGUAACGCAG .(((((((((((......))))))))((((((((((..........))))(((((....).(((((...)))))))))((((........))))))))))..)))....(((...))).. ( -35.00) >DroSec_CAF1 1753 120 - 1 ACAUUAACACACUGAUGUGUGUGUUAUUUAUUGCGACACAAAGGACUCGCGCAGGGAGACAGACGUUCAAUGUCCUGCAGCCUGCAAACUGGCUAAUAAAAUGUGACGAGCGUAACGCAG ....((((((((......)))))))).....((((.((((.(((((..(((...(....)...))).....)))))..((((........)))).......))))((....))..)))). ( -34.80) >DroSim_CAF1 6384 120 - 1 ACAUUAACACACUGAUGUGUGUGUUAUUUAUUGCGACACAAAGGACUCGCGCAGGGAGACAGACGUUCAAUGUCCUGCAGCCUGCAAACUGGCUAAUAAAAUGUGACGAGCGUAACGCAG ....((((((((......)))))))).....((((.((((.(((((..(((...(....)...))).....)))))..((((........)))).......))))((....))..)))). ( -34.80) >DroEre_CAF1 1708 120 - 1 ACACUAACACACUGAUGUGUGUGUUAUUUAUUGCGACACAAAGGACUCGCGCAGGGAGACAGACGUUCAAUGUCCUGCAGCCUGCAAACUGGCUAAUAAAAUGUGACGAGCGUAACGCAG .(((((((((((......))))))))((((((((((..........))))(((((....).(((((...)))))))))((((........))))))))))..)))....(((...))).. ( -35.00) >DroYak_CAF1 3749 120 - 1 ACACUAACACACUGAUGUGUGUGUUAUUUAUUGCGACACAAAGGACUCGCGCAGGGAGACAGACGUUCAAUGUCCUGCAGCCUGCAAACUGGCUAAUAAAAUGUGACGAGCGUAACGCAG .(((((((((((......))))))))((((((((((..........))))(((((....).(((((...)))))))))((((........))))))))))..)))....(((...))).. ( -35.00) >consensus ACACUAACACACUGAUGUGUGUGUUAUUUAUUGCGACACAAAGGACUCGCGCAGGGAGACAGACGUUCAAUGUCCUGCAGCCUGCAAACUGGCUAAUAAAAUGUGACGAGCGUAACGCAG ....((((((((......)))))))).....((((.((((.(((((..(((...(....)...))).....)))))..((((........)))).......))))((....))..)))). (-34.74 = -34.74 + -0.00)
Location | 13,853,555 – 13,853,660 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 95.61 |
Mean single sequence MFE | -27.73 |
Consensus MFE | -23.73 |
Energy contribution | -23.73 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.19 |
Structure conservation index | 0.86 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.671478 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13853555 105 - 22224390 CACACAAACACUCGAACACACAC--ACACACUAACACACUGAUGUGUGUGUUAUUUAUUGCGACACAAAGGACUCGCGCAGGGAGACAGACGUUCAAUGUCCUGCAG ..............(((((((((--(((...........)).)))))))))).......((((..........))))(((((....).(((((...))))))))).. ( -26.70) >DroSim_CAF1 6424 107 - 1 CACACAAACACUCGAACACACACACACACAUUAACACACUGAUGUGUGUGUUAUUUAUUGCGACACAAAGGACUCGCGCAGGGAGACAGACGUUCAAUGUCCUGCAG .....................((((((((((((......))))))))))))........((((..........))))(((((....).(((((...))))))))).. ( -29.50) >DroEre_CAF1 1748 101 - 1 CACACAAACACUCGAACACA------CACACUAACACACUGAUGUGUGUGUUAUUUAUUGCGACACAAAGGACUCGCGCAGGGAGACAGACGUUCAAUGUCCUGCAG ..............((((((------((((.((......)).)))))))))).......((((..........))))(((((....).(((((...))))))))).. ( -27.00) >consensus CACACAAACACUCGAACACACAC__ACACACUAACACACUGAUGUGUGUGUUAUUUAUUGCGACACAAAGGACUCGCGCAGGGAGACAGACGUUCAAUGUCCUGCAG ...............................((((((((......))))))))......((((..........))))(((((....).(((((...))))))))).. (-23.73 = -23.73 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:06 2006