Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,784,788 – 13,784,889 |
Length | 101 |
Max. P | 0.555019 |
Location | 13,784,788 – 13,784,889 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 81.56 |
Mean single sequence MFE | -19.49 |
Consensus MFE | -11.87 |
Energy contribution | -11.65 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.17 |
Mean z-score | -1.78 |
Structure conservation index | 0.61 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.555019 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13784788 101 + 22224390 AGCAUGACACAAA----UAUUUUUACCCCGCAAUUCUACGCUGGCAAUUCUUCUUGUGCUCCACUUUGAUUUGCUUAUCAAGAUCAAAGAGAUC-GCUGCUCUUCU ((((((((((((.----.........((.((........)).)).........))))).....(((((((((........)))))))))...))-).))))..... ( -19.11) >DroSec_CAF1 92154 101 + 1 AGCAUGACACAAA----UAUUUUCGCCUCGCAAUUCUCCGCUGGCAAUUCUACUCGUGCUCCACUUUGAUUUGCUUAUCAAGAUCAAAGAGAUC-GCUCCCAUUCU (((((((......----.(((...(((..((........)).)))))).....)))))))...(((((((((........))))))))).....-........... ( -19.40) >DroSim_CAF1 98508 101 + 1 AGCAUGACACAAA----UUUUUUCGCCUCGCAAUUCUCCGCUGGCAAUUUUUCUCGUGCUCCACUUUGAUUUGCUUAUCAAGAUCAAAGAGAUC-GCUCCCAUUCU (((((((.(.(((----((.....(((..((........)).)))))))).).)))))))...(((((((((........))))))))).....-........... ( -21.40) >DroEre_CAF1 93685 105 + 1 AUCAUGACACAUAUGUAUAUCUUCGCCCCGCAAUUCUCCGCUGGCAAUUCUUCUCAUGCUCCACUUUGAUUUGCUUAUCAAGAUCAAAGAGAUC-GCUGCUCUCCU ..(((((.((....))........(((..((........)).)))........))))).....(((((((((........))))))))).....-........... ( -17.20) >DroYak_CAF1 102336 101 + 1 AUCAUGACACAAA----UAUCUUUGCUCCGCAAUUCUCCUUCAGCAAUUCUUCUCAUGCUCCACUUUGAAUUGCUUAUCAAGAUCAAAGAGAUC-GCUGCUCCUCU .............----.......((..((((((((......((((..........)))).......))))))).......((((.....))))-)..))...... ( -15.82) >DroAna_CAF1 101184 97 + 1 -----AAUAGAAA----CAUCUUGGAGGCAAAUUUCUACUCUGGCGUUUCUGCAUUUGCUCCACUUUGAUUUGCUUAUCAAGAUCAAAGAGAUCCGUUUCUCCGCU -----...(((((----((((((((((.(((((..(......)(((....)))))))))))))(((((((((........)))))))))))))..))))))..... ( -24.00) >consensus AGCAUGACACAAA____UAUCUUCGCCCCGCAAUUCUCCGCUGGCAAUUCUUCUCGUGCUCCACUUUGAUUUGCUUAUCAAGAUCAAAGAGAUC_GCUGCUCUUCU .............................((...(((.....((((..........))))...(((((((((........))))))))))))...))......... (-11.87 = -11.65 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:39 2006