Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,778,168 – 13,778,260 |
Length | 92 |
Max. P | 0.999930 |
Location | 13,778,168 – 13,778,260 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 94.67 |
Mean single sequence MFE | -28.12 |
Consensus MFE | -26.42 |
Energy contribution | -26.70 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.06 |
Mean z-score | -1.89 |
Structure conservation index | 0.94 |
SVM decision value | 2.92 |
SVM RNA-class probability | 0.997756 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13778168 92 + 22224390 GAGGCCACCCACACGACAAUCGGAACAGGUAUUGUGCUUUUCCGAUUUCGAUAAUGGAUGAACUCCGAUCCACUGAAAGAAAGAUGGAUUGU (((..((.(((..(((.((((((((.((((.....)))))))))))))))....))).))..)))(((((((((.......)).))))))). ( -29.80) >DroSec_CAF1 85592 92 + 1 GAGGCCACCCACACGACAAUCGGAACAGGUAUUGUGCUUUUCCGAUUUCGAUAAUGGAUGAACUCCGAUCCACUGGGAGAAAGAUGGAUUGC (((..((.(((..(((.((((((((.((((.....)))))))))))))))....))).))..)))(((((((((.......)).))))))). ( -29.60) >DroSim_CAF1 92006 92 + 1 GAGGCCACCCACACGACAAUCGGAACAGGUAUUGUGCUUUUCCGAUUUCGAUAAUGGAUGAACUCCGAUCCACUGGGAGAAAGAUGGAUUGC (((..((.(((..(((.((((((((.((((.....)))))))))))))))....))).))..)))(((((((((.......)).))))))). ( -29.60) >DroEre_CAF1 87132 91 + 1 GAGGCCACCCACACGACAAUCGGAACAGGUAU-GUGCUUUUCCGAUUUCGAUAAUGGAUGAACUCCGAUCCGCUGGAAUAAAGAUGGAUUGG (((..((.(((..(((.((((((((.((((..-..)))))))))))))))....))).))..)))(((((((((.......)).))))))). ( -30.10) >DroYak_CAF1 95035 92 + 1 GAGGCCACCCACACAACAAUCGGAACAGGUAUUGUGGUUUUUCGAUUUCGAUAAUGGAUGAACUGCGAUCCACUGGGAAAAAGAUGGAUUGG .((..((.((((((((..(((......))).))))).....(((....)))...))).))..)).(((((((((.......)).))))))). ( -21.50) >consensus GAGGCCACCCACACGACAAUCGGAACAGGUAUUGUGCUUUUCCGAUUUCGAUAAUGGAUGAACUCCGAUCCACUGGGAGAAAGAUGGAUUGC (((..((.(((..(((.((((((((.((((.....)))))))))))))))....))).))..)))(((((((((.......)).))))))). (-26.42 = -26.70 + 0.28)
Location | 13,778,168 – 13,778,260 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 94.67 |
Mean single sequence MFE | -28.31 |
Consensus MFE | -26.88 |
Energy contribution | -27.52 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.03 |
Mean z-score | -2.54 |
Structure conservation index | 0.95 |
SVM decision value | 4.63 |
SVM RNA-class probability | 0.999930 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13778168 92 - 22224390 ACAAUCCAUCUUUCUUUCAGUGGAUCGGAGUUCAUCCAUUAUCGAAAUCGGAAAAGCACAAUACCUGUUCCGAUUGUCGUGUGGGUGGCCUC .(.((((((..........)))))).)(((..(((((((...(((((((((((.((........)).)))))))).))).)))))))..))) ( -31.30) >DroSec_CAF1 85592 92 - 1 GCAAUCCAUCUUUCUCCCAGUGGAUCGGAGUUCAUCCAUUAUCGAAAUCGGAAAAGCACAAUACCUGUUCCGAUUGUCGUGUGGGUGGCCUC .(.((((((..........)))))).)(((..(((((((...(((((((((((.((........)).)))))))).))).)))))))..))) ( -31.00) >DroSim_CAF1 92006 92 - 1 GCAAUCCAUCUUUCUCCCAGUGGAUCGGAGUUCAUCCAUUAUCGAAAUCGGAAAAGCACAAUACCUGUUCCGAUUGUCGUGUGGGUGGCCUC .(.((((((..........)))))).)(((..(((((((...(((((((((((.((........)).)))))))).))).)))))))..))) ( -31.00) >DroEre_CAF1 87132 91 - 1 CCAAUCCAUCUUUAUUCCAGCGGAUCGGAGUUCAUCCAUUAUCGAAAUCGGAAAAGCAC-AUACCUGUUCCGAUUGUCGUGUGGGUGGCCUC ((.((((..............)))).))((..(((((((...(((((((((((.((...-....)).)))))))).))).)))))))..)). ( -28.64) >DroYak_CAF1 95035 92 - 1 CCAAUCCAUCUUUUUCCCAGUGGAUCGCAGUUCAUCCAUUAUCGAAAUCGAAAAACCACAAUACCUGUUCCGAUUGUUGUGUGGGUGGCCUC ...((((((..........))))))...((..((((((...(((....))).....(((((((...........)))))))))))))..)). ( -19.60) >consensus CCAAUCCAUCUUUCUCCCAGUGGAUCGGAGUUCAUCCAUUAUCGAAAUCGGAAAAGCACAAUACCUGUUCCGAUUGUCGUGUGGGUGGCCUC .(.((((((..........)))))).)(((..(((((((...(((((((((((.((........)).)))))))).))).)))))))..))) (-26.88 = -27.52 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:36 2006