Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,754,762 – 13,754,855 |
Length | 93 |
Max. P | 0.757353 |
Location | 13,754,762 – 13,754,855 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 81.29 |
Mean single sequence MFE | -25.08 |
Consensus MFE | -15.68 |
Energy contribution | -16.18 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.11 |
Structure conservation index | 0.63 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.757353 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13754762 93 + 22224390 UUAGAUUAGUCGCCUGUAAUUAGUUAAUAACAUGGCAAGGCAUGUCUAAAUUGCAGU-CGCGACAUCAAAUUGCAAGCGGCUGCAUUUUGAUGC-------- ((((((..(((((((((.(((....))).))).)))..)))..))))))..((((((-(((..((......))...))))))))).........-------- ( -28.30) >DroPse_CAF1 76048 85 + 1 UUAGAUUAGUCGCCUGUAAUUAGUUAAUAACAUGGCAAGGCAUGUCUAAAUUGCUGCGCGCGACAUCAAGUUGCACGUUGC---------ACGG-------- ((((((..(((((((((.(((....))).))).)))..)))..))))))..(((.(((.(((((.....))))).))).))---------)...-------- ( -26.00) >DroWil_CAF1 73071 82 + 1 UUAGAUUAGUCGCCUGUAAUUAGUUAAUAACAUGGCAUGGCAUGUCUAAAUUGCAGU-CGCGACAUUAAAUUGCAAGCGGCA---------A---------- ........(((((.(((((((........(((((......))))).....((((...-.)))).....))))))).))))).---------.---------- ( -20.70) >DroMoj_CAF1 85850 101 + 1 UUAGAUUAGUCGCCUGUAAUUAGUUAAUAACAUGGCAUGGCAUGUCUAAAUUGCAGU-CGCGACAUCAAAUUGUAAGCGGCUACAUUUUGAUGCUGCUGCUG ((((((..(((((((((.(((....))).))).)))..)))..))))))....((((-.(((.(((((((.((((......)))).))))))).))).)))) ( -30.40) >DroAna_CAF1 71854 78 + 1 UUAGAUUAGUCGCCUGUAAUUAGUUAAUAACAUGGCAAGGCAUGUCUAAAUGGCAGU-CGCGACAUCGAGUGGCAAGAG----------------------- ((((((..(((((((((.(((....))).))).)))..)))..)))))).((.((.(-((......))).)).))....----------------------- ( -19.10) >DroPer_CAF1 76217 85 + 1 UUAGAUUAGUCGCCUGUAAUUAGUUAAUAACAUGGCAAGGCAUGUCUAAAUUGCUGCGCGCGACAUCAAGUUGCACGUUGC---------ACGG-------- ((((((..(((((((((.(((....))).))).)))..)))..))))))..(((.(((.(((((.....))))).))).))---------)...-------- ( -26.00) >consensus UUAGAUUAGUCGCCUGUAAUUAGUUAAUAACAUGGCAAGGCAUGUCUAAAUUGCAGU_CGCGACAUCAAAUUGCAAGCGGC_________ACG_________ ........(((((((((((((((......(((((......))))))).))))))))...)))))...................................... (-15.68 = -16.18 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:30 2006