Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,741,213 – 13,741,321 |
Length | 108 |
Max. P | 0.999249 |
Location | 13,741,213 – 13,741,321 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 92.96 |
Mean single sequence MFE | -34.40 |
Consensus MFE | -26.42 |
Energy contribution | -26.42 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.08 |
Mean z-score | -2.42 |
Structure conservation index | 0.77 |
SVM decision value | 1.23 |
SVM RNA-class probability | 0.933135 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13741213 108 + 22224390 GUUGCAUGUUAAAGUUAGCCAAACGAGUCGCUUUUUAUGGGAGACCUCGUGUGGCAAGCGAAUA-----UUUGAAAGAUGCAUCAUUUGAUGUUGGCCAAAUAUUGCGUGCUC ...((((((....(((.((((.(((((((.(((.....))).)).))))).)))).))).((((-----((((......(((((....)))))....)))))))))))))).. ( -35.70) >DroSec_CAF1 52226 107 + 1 GUUGCAUGUGGAAGUUAGCCAAACGAGUCGCUUAUUAUG-GAGACCUCGUGUGGCAAGCGAAUA-----UUUGAAAGAUGCAUCAUUUGAAGUUGGCCAAAUAUUGCGUGCUC ...((((((....(((.((((.(((((((.((......)-).)).))))).)))).))).((((-----((((...(((...((....)).)))...)))))))))))))).. ( -31.90) >DroSim_CAF1 58041 107 + 1 GUUGCAUGUGGAAGUUAGCCAAACGAGUCGCUUAUUAUG-GAGACCUCGUGUGGCAAGCGAAUA-----UUUGAAAGAUGCAUCAUUUGAAGUUGGCCAAAUAUUGCGUGCUC ...((((((....(((.((((.(((((((.((......)-).)).))))).)))).))).((((-----((((...(((...((....)).)))...)))))))))))))).. ( -31.90) >DroEre_CAF1 52374 112 + 1 GUUGCAUGUUGAAGUUAGCCAAACGAGUCGCUUAUUAUG-GCGGCCUCGUGUGGCAUACGAAUAUAGCAUUUGAAAGAUGCAUCAUUUGGAGUUGGCCAAAUAUUGCGUGCUC ...((((((.((.....((((.((((((((((......)-)))).))))).))))...........(((((.....))))).))((((((......))))))...)))))).. ( -38.40) >DroYak_CAF1 59280 107 + 1 GUUGCAUGUUGAAGUUAGCCAAACGAGUCGCUUAUUAUG-GAGAACUCGUGUGGCAUACGAAUA-----UUUGAAAGAUGCAUCAUUUGCAGUUGGCCAAAUAUUGCGUGCAC ..(((((((........((((.(((((((.((......)-).).)))))).)))).....((((-----((((.....((((.....))))......))))))))))))))). ( -34.10) >consensus GUUGCAUGUUGAAGUUAGCCAAACGAGUCGCUUAUUAUG_GAGACCUCGUGUGGCAAGCGAAUA_____UUUGAAAGAUGCAUCAUUUGAAGUUGGCCAAAUAUUGCGUGCUC ...((((......(((.((((.(((((((.............)).))))).)))).)))....................(((..(((((........)))))..))))))).. (-26.42 = -26.42 + -0.00)
Location | 13,741,213 – 13,741,321 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 92.96 |
Mean single sequence MFE | -27.52 |
Consensus MFE | -23.71 |
Energy contribution | -23.79 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.05 |
Mean z-score | -2.68 |
Structure conservation index | 0.86 |
SVM decision value | 3.46 |
SVM RNA-class probability | 0.999249 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13741213 108 - 22224390 GAGCACGCAAUAUUUGGCCAACAUCAAAUGAUGCAUCUUUCAAA-----UAUUCGCUUGCCACACGAGGUCUCCCAUAAAAAGCGACUCGUUUGGCUAACUUUAACAUGCAAC ..(((.(((((((((((....((((....))))......)))))-----)))).))..((((.(((((.((.............))))))).))))...........)))... ( -26.52) >DroSec_CAF1 52226 107 - 1 GAGCACGCAAUAUUUGGCCAACUUCAAAUGAUGCAUCUUUCAAA-----UAUUCGCUUGCCACACGAGGUCUC-CAUAAUAAGCGACUCGUUUGGCUAACUUCCACAUGCAAC ..(((.(((.(((((((......))))))).)))..........-----.........((((.(((((.((.(-........).))))))).))))...........)))... ( -24.80) >DroSim_CAF1 58041 107 - 1 GAGCACGCAAUAUUUGGCCAACUUCAAAUGAUGCAUCUUUCAAA-----UAUUCGCUUGCCACACGAGGUCUC-CAUAAUAAGCGACUCGUUUGGCUAACUUCCACAUGCAAC ..(((.(((.(((((((......))))))).)))..........-----.........((((.(((((.((.(-........).))))))).))))...........)))... ( -24.80) >DroEre_CAF1 52374 112 - 1 GAGCACGCAAUAUUUGGCCAACUCCAAAUGAUGCAUCUUUCAAAUGCUAUAUUCGUAUGCCACACGAGGCCGC-CAUAAUAAGCGACUCGUUUGGCUAACUUCAACAUGCAAC ..(((.(((.(((((((......))))))).)))....................((..((((.(((((..(((-........))).))))).))))..)).......)))... ( -31.60) >DroYak_CAF1 59280 107 - 1 GUGCACGCAAUAUUUGGCCAACUGCAAAUGAUGCAUCUUUCAAA-----UAUUCGUAUGCCACACGAGUUCUC-CAUAAUAAGCGACUCGUUUGGCUAACUUCAACAUGCAAC .((((((.(((((((((.....((((.....))))....)))))-----)))))))..((((.(((((((((.-.......)).))))))).))))............))).. ( -29.90) >consensus GAGCACGCAAUAUUUGGCCAACUUCAAAUGAUGCAUCUUUCAAA_____UAUUCGCUUGCCACACGAGGUCUC_CAUAAUAAGCGACUCGUUUGGCUAACUUCAACAUGCAAC ..(((.(((.(((((((......))))))).)))........................((((.(((((..................))))).))))...........)))... (-23.71 = -23.79 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:29 2006