Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,514,481 – 1,514,601 |
Length | 120 |
Max. P | 0.885828 |
Location | 1,514,481 – 1,514,601 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -26.06 |
Consensus MFE | -25.16 |
Energy contribution | -25.76 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.41 |
Structure conservation index | 0.97 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.885828 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1514481 120 - 22224390 UAAUGCUUGAAUGCUCUAAUUUAGCACUAGGAACUUCCUGAAUUGGAUAAAUUUUAAUUAAUUGCUAGCAGAGAGUAGAGGUAAAGCGUUAUAUAGUUGAAUACUCGAAUACAUAUGUGU ((((((((...((((((...((((((.((((.....))))(((((((.....)))))))...))))))...))))))......)))))))).....((((....))))((((....)))) ( -27.50) >DroSec_CAF1 3965 120 - 1 UAAUGCUUGAAUGCUCUAAUAUAGCACUAGGAACUUCCUGAAUUGGAUAAAUUUUAAUUAAUUGCUAGCAGAGAGUAGAGGUAAAGCGUUAUAUAGUUGAAUACUCGAAUACAUAUGUGU ((((((((...((((((....(((((.((((.....))))(((((((.....)))))))...)))))....))))))......)))))))).....((((....))))((((....)))) ( -27.70) >DroSim_CAF1 5187 120 - 1 UAAUGCUUGAAUGCUCUAAUAUAGCACUAGGAACUUCCUGAAUUGGAUAAAUUUUAAUUAAUUGCUAGCAGAGAGUAGAGGUAAAGCGUUAUAUAGUUGAAUACUCGAAUACAUAUGUGU ((((((((...((((((....(((((.((((.....))))(((((((.....)))))))...)))))....))))))......)))))))).....((((....))))((((....)))) ( -27.70) >DroEre_CAF1 3990 120 - 1 UAAUGCUUGAAUGCUCAAAUUUAGCACUAGGAACUUCCUGAAUUGGAUAAAUUUAAAUUAAUUGCUAGCAGAGAGUAGAGGUAAAGCGUUAUAUAGUUGAAUACUCGAAUACAUAUGUGU ((((((((...(((((....((((((..(((.....)))(((((.....)))))........))))))....)))))......)))))))).....((((....))))((((....)))) ( -22.30) >DroYak_CAF1 5528 120 - 1 UAAUGCUUGGAUGCUCUAAUUUAGCACUAGGAACUUCCUGAAUUGGAUAAAUUUAAAUUAAUUGCUAGCAGAGAGUAGAGGUAAAGCGUUAUAUAGUUGAAUACUCGAAUACAUAUGUGU ((((((((...((((((...((((((..(((.....)))(((((.....)))))........))))))...))))))......)))))))).....((((....))))((((....)))) ( -25.10) >consensus UAAUGCUUGAAUGCUCUAAUUUAGCACUAGGAACUUCCUGAAUUGGAUAAAUUUUAAUUAAUUGCUAGCAGAGAGUAGAGGUAAAGCGUUAUAUAGUUGAAUACUCGAAUACAUAUGUGU ((((((((...((((((....(((((.((((.....))))(((((((.....)))))))...)))))....))))))......)))))))).....((((....))))((((....)))) (-25.16 = -25.76 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:53 2006