Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,735,385 – 13,735,479 |
Length | 94 |
Max. P | 0.526245 |
Location | 13,735,385 – 13,735,479 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 80.95 |
Mean single sequence MFE | -22.23 |
Consensus MFE | -16.57 |
Energy contribution | -16.85 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.11 |
Mean z-score | -1.14 |
Structure conservation index | 0.75 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.526245 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13735385 94 + 22224390 CUAC-UUAGAUGUACAUACAUAUAUGAGUACUCACCUUAUGGGCUCUGAUGGAUGUGCCCUCUGAACAAACUAGUGUGACGUCCACCAGGCUCCC .(((-(((.((((....))))...))))))..........((((.(((.(((((((.(.(.(((.......))).).)))))))).))))))).. ( -25.70) >DroGri_CAF1 59257 76 + 1 CU----------------U-UUUG--GGAACUCACCUUAUGGGCUCUGAUGGAUGGGCCCCCUGAACAAGCUAAUGUAACGUCCACCAGGCUCUC ..----------------.-...(--(.......))....((((.(((.(((((((....))...(((......)))...))))).))))))).. ( -18.40) >DroSec_CAF1 46525 87 + 1 AUACCUUAGAUG--------UAUAUGAGUACUCACCUUAUGGGCUCUGAUGGAUGUGCCCUCUGAACAAACUAGUGUGACGUCCACCAGGCUCCC ........((.(--------(((....)))))).......((((.(((.(((((((.(.(.(((.......))).).)))))))).))))))).. ( -21.70) >DroSim_CAF1 52676 87 + 1 AUACCUUAGAUA--------UAUGUGAGUACUCACCUUAUGGGCUCUGAUGGAUGUGCCCUCUGAACAAACUAGUGUGACGUCCACCAGGCUCCC ............--------...((((....)))).....((((.(((.(((((((.(.(.(((.......))).).)))))))).))))))).. ( -22.40) >DroEre_CAF1 46598 87 + 1 AAAGCUGAGAUA--------UAGAACAGUACUCACCUUAUGGGCUCUGAUGGAUGCGCCCUCUGAACAAGCUAGUGUGACGUCCACCAGGCUCCC .(((.((((.((--------(......))))))).)))..((((.(((.(((((((((.((((.....))..)).))).)))))).))))))).. ( -25.90) >DroWil_CAF1 54247 84 + 1 AAA---AAUAUA--------AAGGAAAUCACUCACCUUAUGGGCUCUGAUGGAUGUGCCCUCUGAACAAGCUAAUGUAACGUCCACCAGGCUCUC ...---......--------((((..........))))..((((.(((.(((((((((...((.....)).....)).))))))).))))))).. ( -19.30) >consensus AUAC_UUAGAUA________UAUAUGAGUACUCACCUUAUGGGCUCUGAUGGAUGUGCCCUCUGAACAAACUAGUGUGACGUCCACCAGGCUCCC ........................................((((.(((.(((((((((...(((.......))).))).)))))).))))))).. (-16.57 = -16.85 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:26 2006