Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,704,702 – 13,704,803 |
Length | 101 |
Max. P | 0.538663 |
Location | 13,704,702 – 13,704,803 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 78.21 |
Mean single sequence MFE | -44.65 |
Consensus MFE | -23.76 |
Energy contribution | -25.15 |
Covariance contribution | 1.39 |
Combinations/Pair | 1.29 |
Mean z-score | -1.76 |
Structure conservation index | 0.53 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.538663 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13704702 101 + 22224390 UCCAGGCAGCUGGCAGUCAAACUCUGGAACGUACAGCCGGUGCUGGCCAACGAGAGGGCCGCCUCCAUAUCGAUGCCAAAGGC---------GGCGGCCAAUGCCGCCAC ....(((.((((((..((........))..)).)))).(((..(((((..(....).(((((((.(((....)))....))))---------))))))))..)))))).. ( -42.30) >DroVir_CAF1 21321 95 + 1 UCCAGGCAGCUGGCCGUCAAGCUUUGAAUGGUGCAGCUGACGCCGUGCA------GGGCUAUCUCCAUUUCUAUGCCCAAGGC---------GGCGGCCACAGCGGCCGC ....(((.((((((((((.(((((((.(((((((....).)))))).))------)))))..............(((...)))---------)))))))..))).))).. ( -42.90) >DroPse_CAF1 18596 92 + 1 UCCAGGCAGCUGGCCGUCAGGCUCUGGAAGGUGC------CGCUGGCCAGCGAUAGGGC---CUCCAUGUCGAUGCCGAAGGC---------GGCCGUAAAGGCGGCCAC ....((((((((((((...(((.((....)).))------)..))))))))((((((..---..)).))))..))))...(((---------.(((.....))).))).. ( -47.30) >DroEre_CAF1 16680 101 + 1 UCCAGGCAGCUGGCCGUAAAACUCUGGAACGUACAGCCGGCGCUGGCCAACGAGAGGGCCGCCUCCAUGUCGAUGCCAAAGGC---------GGCGGCCAAUGCCGCCAC ....(((.((((..(((...........)))..)))).((((.(((((..(....).(((((((.(((....)))....))))---------)))))))).))))))).. ( -46.10) >DroYak_CAF1 22284 101 + 1 UCCAGGCAGCUGGCCGUCAAACUUUGGAACGUACAGCCGGUGCUGGCCAACGAGAGGGCCGCCUCCAUAUCGAUGCCAAAGGC---------GGCGGCCAAAGCAGCCAC ....(((.((((((((((...((((((...(..((((....))))..)..(((((((....))))....)))...))))))..---------)))))))..))).))).. ( -42.40) >DroAna_CAF1 18999 110 + 1 UCCAAGCAGCUCGCCGUCAGACUCUGGAAGGUGGAGCAGCUGCUGGCCAGGGAGAGGGCCGCCUCCAUGUCGAUGCCAAAGGCAGCCGCUGCGGCCGCCACGGCCGCCAC ....(((.(((.(((.((...((((((..((..(.....)..))..)))))).)).))).((((.(((....)))....))))))).)))(((((((...)))))))... ( -46.90) >consensus UCCAGGCAGCUGGCCGUCAAACUCUGGAACGUACAGCCGGCGCUGGCCAACGAGAGGGCCGCCUCCAUGUCGAUGCCAAAGGC_________GGCGGCCAAAGCCGCCAC ....(((.(((((((((((.....)))...((((.....)))))))))).......(((((((...........(((...))).........)))))))...)).))).. (-23.76 = -25.15 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:18 2006