Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,675,314 – 13,675,418 |
Length | 104 |
Max. P | 0.980537 |
Location | 13,675,314 – 13,675,418 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.05 |
Mean single sequence MFE | -19.19 |
Consensus MFE | -13.96 |
Energy contribution | -13.78 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.12 |
Mean z-score | -2.27 |
Structure conservation index | 0.73 |
SVM decision value | 1.86 |
SVM RNA-class probability | 0.980537 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13675314 104 - 22224390 UAUUAACAACCCACCGCUAACCACCG--AUACCGAUACUCCAUUG------CCAAUUCCAAUUCCAAUUCCAAUUUUGGCUCCCAUCUGGGGGCUAUUG---AUAAGCCACUUCU----- .........((((...........((--....))..........(------((((....................))))).......))))((((....---...))))......----- ( -15.55) >DroSec_CAF1 7140 91 - 1 UAUUAACAACCCACCGCUAACCACCG--AUACCGAUACUC------------------CAAUUCCAAUUCCAAUUUUGGCUCCCAUCUGGGGGCUAUUG---AUAAG-CACUUCU----- ...............(((......((--....))......------------------..................((((((((....))))))))...---...))-)......----- ( -16.30) >DroEre_CAF1 5938 108 - 1 UAUUAACAGCCCACCGCUAACCAAUUUCAACCCGAUACUCCACUU------CGAAUUCCACUUCCAAUUCCAAUUUUGGCUCCCAUCUGGGGGCCAUUGAUGAUAAG-CGAUUCU----- ..............((((..............(((.........)------)).................((.(..((((((((....))))))))..).))...))-)).....----- ( -22.30) >DroYak_CAF1 6639 115 - 1 UAUUAACAGCCCAACGCUAACCAAUUCCAAC-CGAUACUCCAAUUCCGAAUCGGAUUCCAAUUCCAAUUCCAAUUUUGGCUCCCAUCUGGGGGCUAUUG---AUAAG-CACUUCUGACAC ((((((.(((((...................-.......((((....((((.(((.......))).)))).....))))...((....))))))).)))---)))..-............ ( -22.60) >consensus UAUUAACAACCCACCGCUAACCAACG__AAACCGAUACUCCA_UU______CGAAUUCCAAUUCCAAUUCCAAUUUUGGCUCCCAUCUGGGGGCUAUUG___AUAAG_CACUUCU_____ ............................................................................((((((((....))))))))........................ (-13.96 = -13.78 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:02 2006