Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,628,581 – 13,628,701 |
Length | 120 |
Max. P | 0.514646 |
Location | 13,628,581 – 13,628,701 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.00 |
Mean single sequence MFE | -31.94 |
Consensus MFE | -27.96 |
Energy contribution | -28.60 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.09 |
Mean z-score | -1.22 |
Structure conservation index | 0.88 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514646 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13628581 120 - 22224390 CCCAGAUUGUUGACUGUUUGCUUUUGGUAAUACUAAAUUUAGCGAACAUUGCCUGCGAAUACAUUUUCUUAAAGUCUAUAAAAAGCGAAAGCGAAGGCCAGCGGGACGGGACGAAACGGG (((...(((((...(((((((((((((.....)))))...))))))))(((((((((((......))).....((((.......((....))..))))..))))).))))))))...))) ( -32.40) >DroSec_CAF1 22240 120 - 1 CCCAGAUUGUUGACUGUUUGCUUUUGGUAAUACUAAAUUUAGCGAACGCUGCCUGCGAAUACAUUUUCUUAAAGUCUAUAAAAAGCGAAAGCGAAAGCCAGCGGGACGGGACGAAACGGG (((...(((((....((((((((((((.....)))))...))))))).(((((((((((......)))................((....))........))))).))))))))...))) ( -33.60) >DroSim_CAF1 15495 120 - 1 CCCAGAUUGUUGACUGUUUGCUUUUGGUAAUACUAAAUUUAGCGAACGCUGCCUGCGAAUACAUUUUCUUAAAGUCUAUAAAAAGCGAAAGCGAAAGCCAGCGGGACGGGACGAAACGGG (((...(((((....((((((((((((.....)))))...))))))).(((((((((((......)))................((....))........))))).))))))))...))) ( -33.60) >DroEre_CAF1 13609 119 - 1 CCCAGAUUGUUGACUGUUUGCUUUUGGUAAUACUAAAUUUAGCAAACGCUGCCUGCGAAUCCAUUUACUUAAAGUCUAUAAAAAGCGAAAGCGAAAGCUAGCG-AACGGGACGAAACGGG (((...(((((..((((((((.(((((.....)))))..((((...(((.....)))...........................((....))....)))))))-))))))))))...))) ( -31.10) >DroYak_CAF1 12929 119 - 1 CCCAGAUUGUUGACUGUUUGCAUUUGGUAAUACUAAAUUUAGCAAACGCUGCCUGCGAAUCCAUUUACUUAAAGUCUAUAAAAAGCGAAAGCGAAAGCCAGCG-GACGGGACGAAACGGG (((...(((((..((((((((((((((.....))))))...((...(((.....)))...........................((....))....))..)))-))))))))))...))) ( -29.00) >consensus CCCAGAUUGUUGACUGUUUGCUUUUGGUAAUACUAAAUUUAGCGAACGCUGCCUGCGAAUACAUUUUCUUAAAGUCUAUAAAAAGCGAAAGCGAAAGCCAGCGGGACGGGACGAAACGGG (((...(((((...(((((((((((((.....)))))...))))))))(((((((((((......)))................((....))........))))).))))))))...))) (-27.96 = -28.60 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:41 2006