Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,561,383 – 13,561,475 |
Length | 92 |
Max. P | 0.997705 |
Location | 13,561,383 – 13,561,475 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 91.29 |
Mean single sequence MFE | -11.90 |
Consensus MFE | -11.19 |
Energy contribution | -11.00 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.05 |
Mean z-score | -3.83 |
Structure conservation index | 0.94 |
SVM decision value | 2.91 |
SVM RNA-class probability | 0.997705 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13561383 92 - 22224390 CAUGAGAUUCCACUAAUAAACAAAAACAAAAAAAAACACACCCACAAACACAGACAAUUAUAUAGCUAUAGUUAUAUAAAAUGGAAUUUUAU .(((((((((((................................(.......)....(((((((((....)))))))))..))))))))))) ( -14.60) >DroSec_CAF1 16315 83 - 1 CAUGCGAUUCCACUAAUAAACAAA---------AAACACACCCACAAACACAGACAAUUAUAUAGCUAUAGUUAUAUAAAAUGGAAUUUUAU .(((.(((((((............---------...........(.......)....(((((((((....)))))))))..))))))).))) ( -11.00) >DroSim_CAF1 8747 84 - 1 CAUGCGAUUCCACUAAAAAACAAA--------AAAACACACCCACAAACACAGACAAUUAUAUAGCUAUAGUUAUAUAAAAUGGAAUUUUAU .(((.(((((((............--------............(.......)....(((((((((....)))))))))..))))))).))) ( -11.00) >DroYak_CAF1 16127 82 - 1 CAUGCGAUUCCACUAAAAAA-AA---------AAAACACACCCACAAACACAGACAAUUAUAUAGCUCUAGUUGUAUAAAAUGGAAUUUUAU .(((.(((((((........-..---------............(.......)....(((((((((....)))))))))..))))))).))) ( -11.00) >consensus CAUGCGAUUCCACUAAAAAACAAA________AAAACACACCCACAAACACAGACAAUUAUAUAGCUAUAGUUAUAUAAAAUGGAAUUUUAU .(((.(((((((................................(.......)....(((((((((....)))))))))..))))))).))) (-11.19 = -11.00 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:01 2006