Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,547,950 – 13,548,045 |
Length | 95 |
Max. P | 0.904865 |
Location | 13,547,950 – 13,548,045 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 84.64 |
Mean single sequence MFE | -24.60 |
Consensus MFE | -14.46 |
Energy contribution | -15.08 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.17 |
Mean z-score | -3.14 |
Structure conservation index | 0.59 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.904865 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13547950 95 + 22224390 ACGUAUAUCUGGUCAUAUACACCAUAUGCAUAUGUUAUCCAAUUA-ACAUUACAUGUAUAUGAGGCAUUGAAUUGUAUGAAUUUUAAUGCUCUCUA ..((((((......))))))...((((((((((((((......))-))))...))))))))(((((((((((.(......).)))))))).))).. ( -24.20) >DroSec_CAF1 2882 96 + 1 ACGUAUAUCUUGGCAUAUACACCAUAUGCAUAUGUUAUCCAAUCGGGUAUUACAUGUAUAUGAGGCAUUGAAUUGUAUGAAUUUUAAUGCUCUCUA ..((((((......))))))...((((((((.((.(((((....))))).)).))))))))(((((((((((.(......).)))))))).))).. ( -26.10) >DroEre_CAF1 2850 93 + 1 ACGUAUAUCUGGGCAUAUA--CCGUACGCAUAUGUUGUCCAAUCGGGGAU-GCAUGUAUGUGAGGCAUUGAAUUGUAUGAAUUUUAAUGCUCUCUA ((((((((....((((...--(((...(((.....))).....)))..))-))))))))))(((((((((((.(......).)))))))).))).. ( -24.90) >DroYak_CAF1 2828 82 + 1 ACAUAUAUCUGGGCAUAUA--CCAUAUGCAUA----------UCGGGUAU--UAUGUAUGUGAGGCAUUGAAUUGUAUGAAUUUUAAUGCUCUCUA ((((((((((((((((((.--..))))))...----------))))))).--)))))....(((((((((((.(......).)))))))).))).. ( -23.20) >consensus ACGUAUAUCUGGGCAUAUA__CCAUAUGCAUAUGUUAUCCAAUCGGGUAU_ACAUGUAUAUGAGGCAUUGAAUUGUAUGAAUUUUAAUGCUCUCUA ((((((((((((((((((.....)))))).............))))))))...))))....(((((((((((.(......).)))))))).))).. (-14.46 = -15.08 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:55 2006