Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,502,698 – 1,502,806 |
Length | 108 |
Max. P | 0.996509 |
Location | 1,502,698 – 1,502,806 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 88.98 |
Mean single sequence MFE | -28.68 |
Consensus MFE | -23.94 |
Energy contribution | -25.34 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.60 |
Structure conservation index | 0.83 |
SVM decision value | 2.71 |
SVM RNA-class probability | 0.996509 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1502698 108 + 22224390 ACAAAUCCGAUUCGGACUCGGAUUCGAUAUCGAAUUUGAGCCGAGUUUCCCACCUUCGGCAUUAUGAACUGUGCAAUUCGAGUUCAAAGUUCAACAACAACCAUCACA ...((((((((((((.((((((((((....)))))))))))))))..........)))).))).((((((.((.(((....))))).))))))............... ( -29.20) >DroSec_CAF1 27411 108 + 1 ACAAAUCCGAUUCGGACUCGGAUUCGAUAUCGAAUUUGAGCCGAGUUUCCCACCUGCGGCAUUAUGAACUGUGCAAUUCGAGUUCAAAGUUCAACAAUAUUCAUCACA ...((((((((((((.((((((((((....))))))))))))))))..........))).))).((((((.((.(((....))))).))))))............... ( -28.70) >DroSim_CAF1 11937 108 + 1 ACAAAUCCGAUUCGGACUCGGAUUCGAUAUCGAAUUUGAGCCGAGUUUCCCACCUGCGGCAUUAUGAACUGUGCAAUUCGAGUUCAAAGUUCAACAAUAUCCAUCACA ........(((((((.((((((((((....)))))))))))))))))..........((.....((((((.((.(((....))))).)))))).......))...... ( -28.80) >DroEre_CAF1 31770 93 + 1 UCGAAUCCGAUUCGGACUCGGAGUCGAAUUCGAAUUUGAGCCGAGUUCCCCACC---------------UGUGCAAUUCGAGUUCAAAGUUCAACAACAACCAUCACA ((((((.((((((.......)))))).)))))).(((((((((((((.(.(...---------------.).).)))))).))))))).................... ( -25.10) >DroYak_CAF1 3269 108 + 1 ACGAAUCCGAUUCGGACUCGGAUUCGAAUUCGAAUUUGAGCCGCGUUCCCCAUCUGCGGCAUUAUGAACUGUGCAAUUCGAGUUCAAAGUUCAACAACAACCAUCACA .(((((((((.......))))))))).....((((((..((((((.........))))))....((((((..........))))))))))))................ ( -31.60) >consensus ACAAAUCCGAUUCGGACUCGGAUUCGAUAUCGAAUUUGAGCCGAGUUUCCCACCUGCGGCAUUAUGAACUGUGCAAUUCGAGUUCAAAGUUCAACAACAACCAUCACA ........(((((((.((((((((((....))))))))))))))))).................((((((.((.(((....))))).))))))............... (-23.94 = -25.34 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:33 2006