Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,547,121 – 13,547,217 |
Length | 96 |
Max. P | 0.676632 |
Location | 13,547,121 – 13,547,217 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 80.70 |
Mean single sequence MFE | -31.88 |
Consensus MFE | -22.78 |
Energy contribution | -22.57 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.24 |
Mean z-score | -1.43 |
Structure conservation index | 0.71 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.676632 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13547121 96 + 22224390 ---CC-CCAACCCAUUGCAGUUCUCCUUCGAGAGCUGCAAGUUCAAAAUUCAGCGCAGCAAGGAGGGCACCGGACGUAUCGUGGUCUGGAUGCUGGGCAU ---.(-((...((.(((((((((((....)))))))))))............((...))..))..((((((((((........)))))).)))))))... ( -36.50) >DroVir_CAF1 1320 95 + 1 AUAUU-UC--UCCAU--CAGUUCUCGUUUGAGAGCUGUAAGUUUAAGAUCCAACGUAGCAAGGAAGGGACAGGACGCAUUGUUGUUUGGAUGCUGGGCAU .....-..--.....--((((((((....))))))))...(((((..((((((....((((.((.(.(......).).)).))))))))))..))))).. ( -23.50) >DroPse_CAF1 1728 100 + 1 AUACGAUUGGUUGAUUGCAGUUCUCCUUCGAGAGCUGCAAGUUCAAAAUACAACGCAGCAAAGAGGGCACUGGUCGUAUUGUGGUCUGGAUGCUGGGCAU (((((((..((((((((((((((((....)))))))))))..)))............((.......))))..)))))))....(((..(...)..))).. ( -33.50) >DroEre_CAF1 2022 99 + 1 GUAUC-UCACCCCAUCGCAGUUCUCCUUCGAGAGCUGCAAGUUCAAGAUCCAGCGCAGUAAGGAGGGCACCGGACGCAUCGUGGUCUGGAUGCUGGGCAU .....-..........(((((((((....)))))))))........(.((((((((..........)).((((((........))))))..))))))).. ( -34.30) >DroAna_CAF1 1947 96 + 1 AUAUC-CC---UUAUCCUAGUUCUCAUUUGAGAGCUGCAAGUUCAAGAUCCAACGAAGCAAGGAGGGCACCGGCCGCAUCGUUGUCUGGAUGCUGGGCAU ....(-((---.(((((((((((((....))))))))........(((..((((((.((......(((....))))).))))))))))))))..)))... ( -30.90) >DroPer_CAF1 1584 100 + 1 AUUCGAUUGAUUGAUUGCAGUUCUCCUUCGAGAGCUGCAAGUUCAAAAUACAACGCAGCAAAGAGGGCACUGGUCGUAUUGUGGUCUGGAUGCUGGGCAU ......((((....(((((((((((....)))))))))))..)))).......(.(((((...(((.(((..........))).)))...))))).)... ( -32.60) >consensus AUACC_UC__UCCAUUGCAGUUCUCCUUCGAGAGCUGCAAGUUCAAAAUCCAACGCAGCAAGGAGGGCACCGGACGCAUCGUGGUCUGGAUGCUGGGCAU ................(((((((((....)))))))))...............(.(((((...(((.(((..........))).)))...))))).)... (-22.78 = -22.57 + -0.22)
Location | 13,547,121 – 13,547,217 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 80.70 |
Mean single sequence MFE | -28.77 |
Consensus MFE | -17.75 |
Energy contribution | -18.58 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.14 |
Mean z-score | -1.59 |
Structure conservation index | 0.62 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.548619 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13547121 96 - 22224390 AUGCCCAGCAUCCAGACCACGAUACGUCCGGUGCCCUCCUUGCUGCGCUGAAUUUUGAACUUGCAGCUCUCGAAGGAGAACUGCAAUGGGUUGG-GG--- ...((((((..((((((........)))((((((..........))))))..........((((((.((((....)))).))))))))))))))-).--- ( -34.00) >DroVir_CAF1 1320 95 - 1 AUGCCCAGCAUCCAAACAACAAUGCGUCCUGUCCCUUCCUUGCUACGUUGGAUCUUAAACUUACAGCUCUCAAACGAGAACUG--AUGGA--GA-AAUAU .(((...)))((((..((((...(((..............)))...)))).............(((.((((....)))).)))--.))))--..-..... ( -16.84) >DroPse_CAF1 1728 100 - 1 AUGCCCAGCAUCCAGACCACAAUACGACCAGUGCCCUCUUUGCUGCGUUGUAUUUUGAACUUGCAGCUCUCGAAGGAGAACUGCAAUCAACCAAUCGUAU ((((.............((.((((((((((((.........)))).)))))))).))...((((((.((((....)))).))))))..........)))) ( -28.40) >DroEre_CAF1 2022 99 - 1 AUGCCCAGCAUCCAGACCACGAUGCGUCCGGUGCCCUCCUUACUGCGCUGGAUCUUGAACUUGCAGCUCUCGAAGGAGAACUGCGAUGGGGUGA-GAUAC ..((((.(((((........)))))(((((((((..........))))))))).......((((((.((((....)))).))))))..))))..-..... ( -39.30) >DroAna_CAF1 1947 96 - 1 AUGCCCAGCAUCCAGACAACGAUGCGGCCGGUGCCCUCCUUGCUUCGUUGGAUCUUGAACUUGCAGCUCUCAAAUGAGAACUAGGAUAA---GG-GAUAU ...(((.(((((.(((((((((.((((..((......)))))).))))))..))).))...)))((.((((....)))).)).......---))-).... ( -25.80) >DroPer_CAF1 1584 100 - 1 AUGCCCAGCAUCCAGACCACAAUACGACCAGUGCCCUCUUUGCUGCGUUGUAUUUUGAACUUGCAGCUCUCGAAGGAGAACUGCAAUCAAUCAAUCGAAU ((((...))))......((.((((((((((((.........)))).)))))))).))...((((((.((((....)))).)))))).............. ( -28.30) >consensus AUGCCCAGCAUCCAGACCACAAUACGUCCGGUGCCCUCCUUGCUGCGUUGGAUCUUGAACUUGCAGCUCUCGAAGGAGAACUGCAAUGAA__GA_GAUAU ..((.(((((...((..(((..........)))..))...))))).))............((((((.((((....)))).)))))).............. (-17.75 = -18.58 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:54 2006