Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,511,366 – 13,511,486 |
Length | 120 |
Max. P | 0.645973 |
Location | 13,511,366 – 13,511,486 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.06 |
Mean single sequence MFE | -42.37 |
Consensus MFE | -20.97 |
Energy contribution | -21.16 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.32 |
Mean z-score | -1.85 |
Structure conservation index | 0.49 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.645973 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13511366 120 + 22224390 UACACUGUAUGCCCAUCCGGUGGAGCAUGUGUUGGCCAAUCUGUUGCCGGUGGCCACGUCCAUUGCCAUCCUGGGCACCCAUGUCGCCCUGGCCUACGUGAUCUUUGCCCUGGCCAUCAU .((((...((((((((...)))).))))))))((((((((((((.(((((.(((.((((....((((......))))...)))).))))))))..))).)))........)))))).... ( -42.40) >DroPse_CAF1 1318 120 + 1 CACGCUGUAUGCCCACCCCGUGGAGCAUGUACUGGCCAACCUUCUCCCGGUGGCACUCUCAAUAGCGCUGCUGGGCACCCACGUCGCCUUGGCCUGGAUGAUCUUUGCCUUGGCCAUUAU .......(((((((((...)))).)))))...(((((((......(((((..((.((......)).))..)))))((.(((.(((.....))).))).)).........))))))).... ( -41.70) >DroWil_CAF1 527 120 + 1 UACAUUGUAUGCCCAUCCUGUGGAACAUAUGUUGGCCAAUUUAAUGCCAGUUGGCCUAUCCAUAGCCCUGUUGGGCACUCAUGUAGCUUUGGCCUGGAUCAUCUUUGGCUUGGCCAUACU (((((.(..((((((..(((((((((....)).((((((((.......))))))))..)))))))......))))))..))))))....(((((.((.(((....))))).))))).... ( -42.50) >DroYak_CAF1 516 120 + 1 CACGCUGUACGCCCAUCCGGUGGAGCAUGUGCUGGCCAAUCUGCUGCCGGUGGCCACCUCCAUUGCCAUCCUGGGCACCCACGUGGCACUGGCCUAUGUCAUUUUCGGCCUGGCCAUUAU ((((.(((.((((.....))))..))))))).((((((....((((..((((((.....(((.((((((..(((....))).)))))).))).....))))))..)))).)))))).... ( -44.60) >DroMoj_CAF1 1715 120 + 1 GACUCUCUAUGCCCACCCCAUCGAGCACGUGCUAGCUAACCUGCUCCCAGUGGGCAUAUCCGUCUCUCUGCUGGGCACCCACGUCGUCGUUGCCUGGGGCAUUAUAUCCCUGGCGGUCAU (((....(((((((((......(((((.((........)).)))))...)))))))))...)))...((((((((((...(((....))))))))((((........))))))))).... ( -41.30) >DroPer_CAF1 5814 120 + 1 CACGCUGUAUGCCCACCCCGUGGAGCAUGUACUGGCCAACCUUCUCCCGGUGGCACUCUCAAUAGCGCUGCUGGGCACCCACGUCGCCUUGGCCUGGAUGAUCUUUGCCUUGGCCAUUAU .......(((((((((...)))).)))))...(((((((......(((((..((.((......)).))..)))))((.(((.(((.....))).))).)).........))))))).... ( -41.70) >consensus CACGCUGUAUGCCCACCCCGUGGAGCAUGUGCUGGCCAACCUGCUCCCGGUGGCCAUCUCCAUAGCCCUGCUGGGCACCCACGUCGCCUUGGCCUGGAUCAUCUUUGCCCUGGCCAUUAU ((((.((..((((((...(((.((.....((((((...........))))))......))....)))....))))))..))))))....(((((.................))))).... (-20.97 = -21.16 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:38 2006