Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,486,437 – 13,486,527 |
Length | 90 |
Max. P | 0.939223 |
Location | 13,486,437 – 13,486,527 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 94.05 |
Mean single sequence MFE | -22.88 |
Consensus MFE | -22.14 |
Energy contribution | -22.18 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.12 |
Mean z-score | -1.34 |
Structure conservation index | 0.97 |
SVM decision value | 1.30 |
SVM RNA-class probability | 0.939223 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13486437 90 + 22224390 UUCUAUUGA--GCUGAGCAUCGAUUUGGGUUCGUUGAAUGCAUUCGAAAUGCAAUCGGACAUUGAUUGGCGCAUUGGAAUUCGAAAUCUAUU .....((((--.(..(((..(((((...(((((.....(((((.....)))))..)))))...)))))..)).)..)...))))........ ( -20.50) >DroSec_CAF1 18905 90 + 1 UUCUAUUGA--GCUGAGUGUCGAUUUGGGUUCGUUGAAUGCAUUCGAAAUGCAAUCGGACAUUGAUUGGCGCAUUGGAAUUCGAAAUCAAUU .....((((--.(..((((((((((...(((((.....(((((.....)))))..)))))...))))))))).)..)...))))........ ( -24.40) >DroSim_CAF1 11537 90 + 1 UUCUAUUGA--GCUGAGUGUCGAUUUGGGUUCGUUGAAUGCAUUCGAAAUGCAAUCGGACAUUGAUUGGCGCAUUGGAAUUCGAAAUCUAUU .....((((--.(..((((((((((...(((((.....(((((.....)))))..)))))...))))))))).)..)...))))........ ( -24.40) >DroEre_CAF1 2877 89 + 1 UUCUAUUGA--GCUGAGUGUUGAUUCGGGUUCAAUGAAUGCAUUCGA-AUGCAAUCGGACAUUGAUUGGCGCAUUGGAAUUCGAAAUCUAUU (((.(((((--(((((((....)))).)))))))))))....(((((-((.((((((..((.....)).)).))))..)))))))....... ( -21.50) >DroYak_CAF1 3142 92 + 1 UUCUAUUCAGUGUUGAGUGUUGAUUUGGGUUCGUUGAAUGCAUUCGAAAUGCAAUCGGACAUUGAUUGGCGCUUUGGAAUUCGAAAUCUAUU (((.((((......((((((..(((...(((((.....(((((.....)))))..)))))...)))..))))))..))))..)))....... ( -23.60) >consensus UUCUAUUGA__GCUGAGUGUCGAUUUGGGUUCGUUGAAUGCAUUCGAAAUGCAAUCGGACAUUGAUUGGCGCAUUGGAAUUCGAAAUCUAUU .....((((...(..((((((((((...(((((.....(((((.....)))))..)))))...))))))))).)..)...))))........ (-22.14 = -22.18 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:32 2006