Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,458,577 – 13,458,729 |
Length | 152 |
Max. P | 0.997161 |
Location | 13,458,577 – 13,458,697 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.17 |
Mean single sequence MFE | -30.90 |
Consensus MFE | -24.50 |
Energy contribution | -25.50 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.18 |
Mean z-score | -2.85 |
Structure conservation index | 0.79 |
SVM decision value | 2.42 |
SVM RNA-class probability | 0.993683 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13458577 120 + 22224390 AAUUUCCACCCAAGCUAUACACCACACGAUAUCAAAUUAGCUAACACACCAACCUGUUAUCGAUAUUCCCCUUAGGAAUGUCGAUAACGUACGUGGCCGGUCUGGCAGCUCUGUGCAACA ......(((...((((...........(....)......((((((...(((...(((((((((((((((.....)))))))))))))))....)))...)).))))))))..)))..... ( -32.80) >DroSec_CAF1 3278 120 + 1 AAUUUCCACCCAAGCUAUGCACUACAUGAUAUCAACUUAGCCAAGACGCCAACCUGUUAUCGAUAUUCCCCUUACGAAUGUCGAUAACAUACGUGGCCGGUCUGGCAGCUCUGUGCAACA .................(((((....((....)).....((((.(((((((...((((((((((((((.......))))))))))))))....))))..)))))))......)))))... ( -39.40) >DroSim_CAF1 3362 120 + 1 AAUUUCCACCCAAGCUAUGCACCACAUGAUAUCGACUUAGCCAAGACACCAACCUGUUAUCGAUAUUCCCCUUAUUAAUGUCGAUAACAUACGUGGCCGGUCUGGCAGCUCUGUGCAACA .................(((((....((....)).....((((.(((.(((...(((((((((((((.........)))))))))))))....)))...)))))))......)))))... ( -32.30) >DroEre_CAF1 3199 120 + 1 AAUUUAUACCCAAGUUAUUCACCGCAUAAUAUACUAUUAGCGAAGACACCUACCUAUUAUCGAUAUACAUCUCAGGAAUAUCGAUAACUUACGUGGCCGGUCUGGCAGCUCUGUGCAACA .........((...........(((.(((((...)))))))).((((..((((.((((((((((((.(.......).))))))))))..)).))))...))))))..((.....)).... ( -22.80) >DroYak_CAF1 3233 120 + 1 AAUUUAUACCCGAGUUAUUCACCACACCAUAUACUAUUAGUCAAGACACCAACCAGUUAUCGAUAUAACAGUGAGGAAUGUCGAUAACAUACGUGGCUGGUCUGGCAGCUCUGUGCAACA ...........(((((.....(((.((((..(((.....((....))........(((((((((((..(.....)..)))))))))))....)))..)))).))).)))))......... ( -27.20) >consensus AAUUUCCACCCAAGCUAUGCACCACAUGAUAUCAAAUUAGCCAAGACACCAACCUGUUAUCGAUAUUCCCCUUAGGAAUGUCGAUAACAUACGUGGCCGGUCUGGCAGCUCUGUGCAACA ......(((...((((.............((......))((((.(((.(((...((((((((((((((.......))))))))))))))....)))...)))))))))))..)))..... (-24.50 = -25.50 + 1.00)
Location | 13,458,617 – 13,458,729 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 92.05 |
Mean single sequence MFE | -28.86 |
Consensus MFE | -25.08 |
Energy contribution | -26.64 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.06 |
Mean z-score | -2.24 |
Structure conservation index | 0.87 |
SVM decision value | 2.81 |
SVM RNA-class probability | 0.997161 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13458617 112 + 22224390 CUAACACACCAACCUGUUAUCGAUAUUCCCCUUAGGAAUGUCGAUAACGUACGUGGCCGGUCUGGCAGCUCUGUGCAACAAGUUGAAAAAUAGAAGAAGCAAAUAGAAACAG (((.((.(((..(((((((((((((((((.....))))))))))))))).....))..))).))((..((((((.(((....)))....)))).))..))...)))...... ( -32.10) >DroSec_CAF1 3318 112 + 1 CCAAGACGCCAACCUGUUAUCGAUAUUCCCCUUACGAAUGUCGAUAACAUACGUGGCCGGUCUGGCAGCUCUGUGCAACAAGUUGAAAAAUAGAAGAAGCAAAUAGAAACAG ...((((((((...((((((((((((((.......))))))))))))))....))))..)))).((..((((((.(((....)))....)))).))..))............ ( -33.80) >DroSim_CAF1 3402 112 + 1 CCAAGACACCAACCUGUUAUCGAUAUUCCCCUUAUUAAUGUCGAUAACAUACGUGGCCGGUCUGGCAGCUCUGUGCAACAAGUUGAAAAAUAGAAGAAGCAAAUAGAAACAG ...((((.(((...(((((((((((((.........)))))))))))))....)))...)))).((..((((((.(((....)))....)))).))..))............ ( -27.80) >DroEre_CAF1 3239 112 + 1 CGAAGACACCUACCUAUUAUCGAUAUACAUCUCAGGAAUAUCGAUAACUUACGUGGCCGGUCUGGCAGCUCUGUGCAACAAGUUGAAAAAUAGAAGAAGCAAAUAGAAACAG ...((((..((((.((((((((((((.(.......).))))))))))..)).))))...)))).((..((((((.(((....)))....)))).))..))............ ( -23.10) >DroYak_CAF1 3273 112 + 1 UCAAGACACCAACCAGUUAUCGAUAUAACAGUGAGGAAUGUCGAUAACAUACGUGGCUGGUCUGGCAGCUCUGUGCAACAAGUUGAAAAAUAGAAGAAGCAAAUAGAAACAG ...((((.(((....(((((((((((..(.....)..))))))))))).....)))...)))).((..((((((.(((....)))....)))).))..))............ ( -27.50) >consensus CCAAGACACCAACCUGUUAUCGAUAUUCCCCUUAGGAAUGUCGAUAACAUACGUGGCCGGUCUGGCAGCUCUGUGCAACAAGUUGAAAAAUAGAAGAAGCAAAUAGAAACAG ...((((.(((...((((((((((((((.......))))))))))))))....)))...)))).((..((((((.(((....)))....)))).))..))............ (-25.08 = -26.64 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:16 2006