Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,444,594 – 13,444,696 |
Length | 102 |
Max. P | 0.986651 |
Location | 13,444,594 – 13,444,696 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 77.24 |
Mean single sequence MFE | -38.12 |
Consensus MFE | -20.22 |
Energy contribution | -19.45 |
Covariance contribution | -0.77 |
Combinations/Pair | 1.42 |
Mean z-score | -2.83 |
Structure conservation index | 0.53 |
SVM decision value | 2.05 |
SVM RNA-class probability | 0.986651 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13444594 102 + 22224390 -UUUUUCUUCUACCUGGGCAGACAGCUGUUCGUAUAACUUCAGUUUCUUGAU-CAGCU-CCUCUU-CACUGGCAGCUAGCUGUUGGGCAAGCUG-AUCGUGCUCU-UU -..............(((((((.(((((............)))))))..(((-(((((-......-..(..((((....))))..)...)))))-))).))))).-.. ( -28.80) >DroPse_CAF1 4098 103 + 1 UCAUUUGUUUGGCCUUGGCUCGCAGCUCCUUGAUCAGAUCACGCUUUUUGGC-GGCAU-CCUCCU-GCAUGGCCUGCAGAUGCUGCCUGAGCUG-CUCCUGCUUG-CA .....(((..(((...((...(((((((..((((...))))........(((-(((((-(....(-(((.....))))))))))))).))))))-).)).))).)-)) ( -35.60) >DroSec_CAF1 3883 107 + 1 -CUUUUCUUCUGCCCGGGCAGACAGCUGCUCGAAUAGCUUCAGUUUCUUGGUUCAGCUUCCUCUUGGACUGACAGCUAGCUGUUGGACAAGCUGGGUCGUGCUCUUUU -.......(((((....)))))(((((..((.(((((((..((((..(..((((((.......))))))..).))))))))))).))..))))).............. ( -34.40) >DroSim_CAF1 4389 102 + 1 -CUUUUCUUCUGCCCGGGCAGACAGCUGUUCGAAUAGCUUCAGUUUCUUGGU-CAGCU-CCUCUU-GACUGGCAGCUAGCUGUUGGGCAAGCUG-GUCGUGCUCU-UU -..............((((((((((((((((((.(((((((((((....((.-.....-))....-)))))).)))))....)))))).)))).-))).))))).-.. ( -35.80) >DroEre_CAF1 4205 102 + 1 -CUUUUCUUCUGUCUGCGCAGACAGCUGGUCGAAUAGCAUCAGCUGCUUGGU-CAGGU-CGUCUU-GACUGGCAGCUAGCUGUUGGGCGAGCUG-GUCGUGCUCU-UU -..............((((.(((((((.(((.((((((...(((((((.(((-((((.-...)))-))))))))))).)))))).))).)))).-)))))))...-.. ( -47.50) >DroYak_CAF1 4495 102 + 1 -CAUUUCUUCUGCCUGGGCAGACAGCUGGUCGAAUAGCUUAAGCUGCUUGGG-CAGGU-CCUCUU-GACUGGCAGCUAGCUGUUGGGCGAGCUG-GUCGUGCUCU-UU -..............((((((((((((.(((.(((((((..(((((((.(..-((((.-...)))-).).)))))))))))))).))).)))).-))).))))).-.. ( -46.60) >consensus _CUUUUCUUCUGCCUGGGCAGACAGCUGCUCGAAUAGCUUCAGCUUCUUGGU_CAGCU_CCUCUU_GACUGGCAGCUAGCUGUUGGGCAAGCUG_GUCGUGCUCU_UU ........(((((....)))))(((((..((((..(((....)))..)))).................(((((((....)))))))...))))).............. (-20.22 = -19.45 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:10 2006