Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,494,666 – 1,494,762 |
Length | 96 |
Max. P | 0.551574 |
Location | 1,494,666 – 1,494,762 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 85.48 |
Mean single sequence MFE | -32.43 |
Consensus MFE | -24.43 |
Energy contribution | -26.77 |
Covariance contribution | 2.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.81 |
Structure conservation index | 0.75 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.551574 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1494666 96 - 22224390 UUGCUAAACACUCUGCGGCUGGCAGAUGAGCUGAAGCUGGAAAGCAGCGAGUUAAUUAAUUUUGCGUAGUUCAUCAAACAAGCCUGGCGGAGCGGC----------- ........(.((((((((((....(((((((((..(((....))).(((((.........))))).))))))))).....))))..)))))).)..----------- ( -35.20) >DroSec_CAF1 19343 96 - 1 UUGCUAAACACUCUGCGGCUGGCAGAUGAGCUGGAGCUGGAAAGCAGCGAGUUAAUUAAUUUUGCGUAGUUCAUCAAACAAGCCUGGCGGAGCGGC----------- ........(.((((((((((....(((((((((..(((....))).(((((.........))))).))))))))).....))))..)))))).)..----------- ( -35.20) >DroEre_CAF1 23752 100 - 1 UUGCUAAACACUCUGCGGCUGGCAGAUGAGC------UGGAAAGCAGCGAGUUAAUUAAUUUUGCGGAGUUCAUCAAGCAAA-CUGGCGUAGCGGCGAUUGGGCUUG ..(((...((.((.((.((((.(.(((((((------(....))).(((((.........))))).....)))))..((...-...))))))).)))).)))))... ( -26.90) >consensus UUGCUAAACACUCUGCGGCUGGCAGAUGAGCUG_AGCUGGAAAGCAGCGAGUUAAUUAAUUUUGCGUAGUUCAUCAAACAAGCCUGGCGGAGCGGC___________ ........(.((((((((((....(((((((((..(((....))).(((((.........))))).))))))))).....))))..)))))).)............. (-24.43 = -26.77 + 2.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:29 2006