Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,430,549 – 13,430,669 |
Length | 120 |
Max. P | 0.600810 |
Location | 13,430,549 – 13,430,669 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.39 |
Mean single sequence MFE | -31.27 |
Consensus MFE | -27.95 |
Energy contribution | -28.32 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.04 |
Mean z-score | -1.18 |
Structure conservation index | 0.89 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.600810 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13430549 120 - 22224390 GAGUUCAUCAAGCGUCAGGACCAGAAGCGCUCCGACCUCGAUGAUCAGCUGAAAGAAUACAUCACCGAGUGGCGCAAACAGAGAUCCAAGGAGGAGGAUGAGCUGAAGAAGCUGAAGGAG .((((((((..(((((((((.(......).)))...((((.((((...(.....).....)))).)))))))))).........(((.....))).))))))))................ ( -30.90) >DroVir_CAF1 17470 120 - 1 GAGUUCAUCAAGCGUCAGGACCAGAAGCGCUCCGAUCUCGAUGAACAGCUGAAAGAAUACAUCAGCGAAUGGCGCAAACAGAGAGCCAAGGAGGAGGAUGAGCUGAAGAAACUGAAGGAG .((((((((..((.((.......)).)).((((..............(((((.........)))))...((((.(.......).)))).))))...))))))))................ ( -30.60) >DroPse_CAF1 36684 120 - 1 GAGUUCAUCAAGCGUCAGGACCAGAAGCGAUCCGAUCUCGAUGAACAGCUGAAAGAAUACAUCAGCGAAUGGCGCAAACAGAGAUCCAAGGAGGAGGAUGAGCUGAAGAAGCUGAAGGAG .((((((((..(((((((((.(......).)))..............(((((.........)))))...)))))).........(((.....))).))))))))................ ( -31.30) >DroWil_CAF1 16920 120 - 1 GAGUUCAUCAAGCGUCAGGAUCAGAAGCGUUCCGAUCUCGAUGAACAGCUGAAGGAAUAUAUCAGCGAAUGGCGCAAACAGAGAUCCAAGGAGGAGGAUGAGUUGAAGAAACUGAAGGAG ...((((((..(((((((((((.((.....)).))))).........(((((.........)))))...)))))).........(((.....))).)))))).................. ( -28.40) >DroMoj_CAF1 20037 120 - 1 GAGUUCAUCAAGCGUCAGGAUCAGAAGCGCUCCGAUCUCGAUGAACAGCUGAAAGAAUACAUCAGCGAAUGGCGCAAACAGAGAGCCAAGGAGGAGGAUGAGCUGAAGAAACUGAAGGAG .((((((((...((((..((((.((.....)).))))..))))....(((((.........)))))...((((.(.......).))))........))))))))................ ( -31.80) >DroAna_CAF1 24178 120 - 1 GAGUUCAUCAAGCGUCAGGACCAGAAGCGCUCCGACCUCGAUGAGCAGCUGAAAGAAUACAUCAGCGAGUGGCGCAAACAAAGAUCCAAGGAGGAGGAUGAGCUGAAGAAACUGAAGGAG .((((((((..((((((...........((((((....))..)))).(((((.........)))))...)))))).........(((.....))).))))))))................ ( -34.60) >consensus GAGUUCAUCAAGCGUCAGGACCAGAAGCGCUCCGAUCUCGAUGAACAGCUGAAAGAAUACAUCAGCGAAUGGCGCAAACAGAGAUCCAAGGAGGAGGAUGAGCUGAAGAAACUGAAGGAG .((((((((..(((((((((.(......).)))..............(((((.........)))))...)))))).........(((.....))).))))))))................ (-27.95 = -28.32 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:06 2006