Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,410,897 – 13,411,011 |
Length | 114 |
Max. P | 0.998912 |
Location | 13,410,897 – 13,411,011 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 93.47 |
Mean single sequence MFE | -39.44 |
Consensus MFE | -34.30 |
Energy contribution | -34.50 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.48 |
Structure conservation index | 0.87 |
SVM decision value | 3.28 |
SVM RNA-class probability | 0.998912 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13410897 114 + 22224390 ACCACCAAGACCGUGGACGGAGUUAUUGUGGUGGCACCGCCAAGCCGCCGCCGCAUCAGCAUCAGCAUCAGCAGUAUCC---UGCACUAUAGGCACAUCACCGCCAGCCCGUCCAAC .............(((((((.(((..(((((((((..(.....)..)))))))))..)))....((....((((....)---)))......(((........))).))))))))).. ( -42.40) >DroSec_CAF1 6724 111 + 1 ACCACCAAGACCGUGGACGGAGUUAUUGUGGUGGCACCGCCAAGCCGCCGCCGCAUCAGCAUCAGCAUCA---GUAUCC---UGCACUAUAGGCACAUCACCGCCAGUCCGUCCAAC .............(((((((((((..(((((((((..(.....)..)))))))))..)))....(((...---......---)))......(((........)))..)))))))).. ( -38.20) >DroSim_CAF1 6260 111 + 1 ACCACCAAGACCGUGGACGGAGUUAUUGUGGUGGCACCGCCAAGCCGCCGCCGCAUCAGCAUCAGCAUCA---GUAUCC---UGCACUAUAGGCACAUCACCGCCAGCCCGUCCAAC .............(((((((.(((..(((((((((..(.....)..)))))))))..)))....((..((---(....)---)).......(((........))).))))))))).. ( -37.60) >DroEre_CAF1 1107 105 + 1 ACCACCAAGACCGUGGACGGAGUUAUUGUGGUGGCACCGCCAAGCCGCCGCCGCAUCAGCAU------CA---GUAUCC---UGCACUAUAGGCACAUCACCGCCGGCCCGUCCACC ............((((((((.........((((((........))))))((((((...((..------..---))....---)))......(((........)))))))))))))). ( -38.80) >DroYak_CAF1 15137 114 + 1 ACCACCAAGAACGUGGACGGAGUUAUUGUGGUGGCACCGCCAAGCCGCCGCCGCAUCAGCAUCAGCAUCA---GUAUCCUGCUGCACUAUAGGCACAUCACAGCCAGCCAGUCCACC ............((((((((.(((..(((((((((..(.....)..)))))))))..)))....(((.((---(....))).)))......(((........)))..)).)))))). ( -40.20) >consensus ACCACCAAGACCGUGGACGGAGUUAUUGUGGUGGCACCGCCAAGCCGCCGCCGCAUCAGCAUCAGCAUCA___GUAUCC___UGCACUAUAGGCACAUCACCGCCAGCCCGUCCAAC .............(((((((.(((..(((((((((..(.....)..)))))))))..)))...............................(((........)))...))))))).. (-34.30 = -34.50 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:55 2006