Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,407,337 – 13,407,429 |
Length | 92 |
Max. P | 0.955375 |
Location | 13,407,337 – 13,407,429 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 85.49 |
Mean single sequence MFE | -30.37 |
Consensus MFE | -24.70 |
Energy contribution | -23.95 |
Covariance contribution | -0.75 |
Combinations/Pair | 1.18 |
Mean z-score | -2.28 |
Structure conservation index | 0.81 |
SVM decision value | 1.45 |
SVM RNA-class probability | 0.955375 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13407337 92 + 22224390 ------GGAGUAU-------GUGGCAAGCCAAAGAACAAGCAAGGCCCUUCAGGGCUUUCUGUCAUAUGUGGAAAUAUAUAUAUUUUCGGUGCUCAUGCACUGCA ------(((((((-------(((.....(((.......((.(((((((....)))))))))........))).....))))))))))((((((....)))))).. ( -29.46) >DroSec_CAF1 3236 88 + 1 ------GGAGUAU-------GUGGCAAGCCAAAGAACAAGCAAGGCCCUUUAGGGCUUUCUGUCAUAUGUGGAAAUA----CAUUUUCGGUGCUUAUGCACUGCG ------.(((.((-------(((.....(((.......((.(((((((....)))))))))........)))...))----))).)))(((((....)))))... ( -27.46) >DroSim_CAF1 3138 88 + 1 ------GGAGUAU-------GUGGCAAGCCAAAGAACAAGCAAGGCCCUUUAGGGCUUUCUGUCAUAUGUGGAAAUA----CAUUUUCGGUGCUUAUGCACUGCG ------.(((.((-------(((.....(((.......((.(((((((....)))))))))........)))...))----))).)))(((((....)))))... ( -27.46) >DroYak_CAF1 11514 101 + 1 CGGAGUGGAGUAUGUGGCAUGUGGCAAGCCGAAGAACAAGCAAGGCCCUUCAGGGCUUUCUGUCAUAUGUGAAGAUA----CAUUCUCAGUGCACAUGCACUGCA .((((((..((...(.((((((((((.((..........))(((((((....))))))).)))))))))).)..)).----))))))((((((....)))))).. ( -37.10) >consensus ______GGAGUAU_______GUGGCAAGCCAAAGAACAAGCAAGGCCCUUCAGGGCUUUCUGUCAUAUGUGGAAAUA____CAUUUUCGGUGCUCAUGCACUGCA .....................(((....)))..((...((.(((((((....))))))))).))...(((((((((......))))))(((((....)))))))) (-24.70 = -23.95 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:48 2006