Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,385,372 – 13,385,484 |
Length | 112 |
Max. P | 0.694372 |
Location | 13,385,372 – 13,385,484 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.82 |
Mean single sequence MFE | -19.78 |
Consensus MFE | -15.92 |
Energy contribution | -16.03 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.06 |
Mean z-score | -1.59 |
Structure conservation index | 0.80 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.694372 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13385372 112 + 22224390 AACCCAAAUAAAAAUAUUUAACUACAUAUUCUGGGAAAAUCAUGGAAAUCGGGGCAAACCGAUAAAGUAAGGUCGGACAUGAAUUUAAAUAAUCAUAAGCCGAGACCCAAAA-------- ..((((((((................)))).)))).......(((..(((((......))))).........((((..((((..........))))...))))...)))...-------- ( -19.59) >DroSim_CAF1 1215 112 + 1 AACCCAUAUAUAAAUAUUUAGCUACAUAUUCUGGGAAAAUCAUGGAAAUCGGGGCAAACCGAUAAAGUAAGGUCGGACAUGAAUUUAAAUAAUCAUAAGCCGAGACCCAAAA-------- ..((((.((((..............))))..)))).......(((..(((((......))))).........((((..((((..........))))...))))...)))...-------- ( -19.64) >DroEre_CAF1 1095 104 + 1 AAUCCAUAU----------------UUGUUCUGUGAAAAUCAUGGAAAUCGGAGCAAACCGAUAAAGUAAGGUCGGACAUGAAUUUAAAUAAUCAUAAGCCGAGACCCGAAACGAAGAAA ...((.(((----------------((.(((((((.....)))))))(((((......))))).))))).))((((..((((..........))))...))))................. ( -20.10) >consensus AACCCAUAUA_AAAUAUUUA_CUACAUAUUCUGGGAAAAUCAUGGAAAUCGGGGCAAACCGAUAAAGUAAGGUCGGACAUGAAUUUAAAUAAUCAUAAGCCGAGACCCAAAA________ ...............................((((............(((((......))))).........((((..((((..........))))...))))..))))........... (-15.92 = -16.03 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:37 2006